Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq9540 125 9e-24 seq5718 93.3 6e-14 seq5887 86.0 8e-12 >seq9540 Length=598 Score = 125 bits (138), Expect = 9e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 126924 GGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAAACAT 126983 ||||||| | ||||| ||||| ||||| || ||||| || ||||| | | |||||| Sbjct 488 GGAAGAATGTTAAAGTCCAAAATATTTATTGGACCAACTTATTATCAAAGATTAAAACAT 429 Query 126984 ATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCA 127042 |||||| |||||||||| ||||| |||||| || | | |||| | |||||| | || Sbjct 428 ATGGTTGAAGATAAAATACATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACA 370 Query 127043 ACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 127102 ||||| || | || || |||||| ||||||||||||||||||||| |||||| Sbjct 369 ACCAACAGAAGGAAGATCAAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAGATTG 310 Query 127103 TATTTTGGTTCATGGAGCCACACAATTTTTAAATGAAAGAATGTTT 127148 ||| | |||||| | | || | ||||| |||||| | ||| Sbjct 309 TATGATATCACATGGATCTGCCAAAATGTTAAAAGAAAGATTATTT 264 >seq5718 Length=822 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 126099 TTAAATTATCCTCAAAAACCACTTGT---TACAACCGATATTGCAGAATTTAATGGTCTA 126155 ||| |||| || ||||||||| | || ||||| | ||| | | | || | | | || Sbjct 631 TTATATTACCCACAAAAACCATTAGTATGTACAAAGGCTATGGAATATTT--ACGTTTTA 688 Query 126156 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAAT 126215 | ||| ||| ||||||||||||||||||||| || |||||| || || || ||| Sbjct 689 GA-GAACTCCCAGCTGGTATTAATGCAATTGTAGCTATTATGTGTTATACAGGTTATAAT 747 Query 126216 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 |||||||||||| | ||| | || || ||||||| || | ||||||||| Sbjct 748 CAAGAAGATAGTTTGATTATGAACCAATCATCTATTGATCGTGGTTTATTT 798 >seq5887 Length=807 Score = 86.0 bits (94), Expect = 8e-12 Identities = 180/260 (69%), Gaps = 19/260 (7%) Strand=Plus/Plus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGT-TTACGCC 104854 |||||||||||||| || ||| | ||||| | || ||||| ||| || | ||| | Sbjct 484 AATTTGATTTAAGTCAAT--ATT-TCCCATTATTAACTACAAAGAAATTATTCTTAAGAG 540 Query 104855 AATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACT---TGTTA 104911 | ||| || ||||||| | ||| | || | ||| ||||||| ||| ||||| Sbjct 541 GA-ATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGCTGTTA 599 Query 104912 AATGAAATTGGTGTTAAAG-TATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTG 104970 ||| | | || ||| | ||||| | | ||||||| | | | ||||||||| | | Sbjct 600 AATAAGAATG----TAAGGATATGGGAAGCTAATGGTACTAGGGAATTTTTAGATAATAG 655 Query 104971 TGGATTTCACTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAG 105027 ||| |||| | ||||| | ||||||||||| |||||||| ||||||||||| Sbjct 656 AAAATTA---TTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAG 712 Query 105028 ACATGCTGGAGCTCAATATA 105047 |||| || ||| |||||| Sbjct 713 ACATTTCGGTGCTGAATATA 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658191227089760