Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5544 233 2e-56 seq6281 118 1e-21 >seq5544 Length=836 Score = 233 bits (258), Expect = 2e-56 Identities = 299/407 (73%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 ||| || ||||||||| |||||| || || ||||||||| || || | |||| Sbjct 829 TATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTA 770 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 ||| || ||||| || | | || | | |||||||| ||| ||| || ||||||| Sbjct 769 TAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAAC 710 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 | || ||||||||||||||||||||| ||| || ||||| ||||| | |||||| Sbjct 709 TATAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTT 650 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAACTATTCCATCA 19371 ||||||| || || || || ||||| || | | ||||||| || ||||| |||||| Sbjct 649 CTGTTATTTGAACCTCTCTTAAAAAT-TTACTAGCCAAATTCTCTAATACTATACCATCA 591 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGT 19430 || ||||||||||||||||| ||||| || ||||||||||| |||| || || ||| | Sbjct 590 CTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCATTCAATTT 532 Query 19431 ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490 | |||| || | ||| |||||||||| | |||||| |||||||||| ||||| || Sbjct 531 CTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTC 472 Query 19491 TGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATA 19537 ||||| || || | | ||| | ||| ||||| ||| ||| ||| Sbjct 471 AGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGATATA 425 >seq6281 Length=778 Score = 118 bits (130), Expect = 1e-21 Identities = 343/516 (66%), Gaps = 33/516 (6%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| ||||||||| || || || ||||| || || || || |||||||| | Sbjct 506 CATGACTCCTGATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTG 447 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| || | ||||| ||| |||||||||||| || | ||||| | |||| Sbjct 446 AAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCC 387 Query 18777 TAA---TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACA 18833 ||| |||||||| | ||||| || ||||||| |||||| ||| | | | Sbjct 386 TAAACATTCTAATAAT---CTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGA 330 Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATC---TGTAAGAAATTCTTGTTCTATATT 18890 |||||| |||||||| | | |||| || || | ||| | || ||| || | | Sbjct 329 ATTCATACCTATTAAATCACATGGTAATGATTCACATATAAAAGAT-CTT--TCAACTTC 273 Query 18891 TACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTT- 18949 ||| || ||| | |||| | || | | ||| | | || ||| || | Sbjct 272 TACAGCTTCTTTAACAATATTTTGTACCATTTGTTC--TGGAAGTTTATT----ATCTAA 219 Query 18950 TAAAC-----ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 ||||| || || || |||||| ||||||||| || ||||||||||| ||||| Sbjct 218 TAAACTATAAATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTC 159 Query 19005 ATTAGAAAATGTTAAACCAGGCA--TCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 |||| ||||||||||||| | | | | | | |||||| ||||| || |||| | || Sbjct 158 ATTACTAAATGTTAAACCATGTAATTTATT--TTGTTTTTTAAACCAAAAAATAGCA-CA 102 Query 19063 AATGAT-CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 || | | ||| || ||||| ||||| || |||| ||| |||| ||||| || | Sbjct 101 AAAGCTACCACTGAATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAA 42 Query 19122 ACTAGCATCATTATTATGAATCCATTTCAGTGCCCA 19157 | || | ||| || ||||||||| |||||| Sbjct 41 ---TGAATTAGTATCATTAATCCATTTTGCTGCCCA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561927829071840