Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3755 246 2e-59 seq582 172 4e-37 seq7523 152 3e-31 seq996 129 4e-24 seq1904 102 5e-16 seq466 102 5e-16 seq2659 100 2e-15 seq5672 96.9 2e-14 seq1017 93.3 3e-13 >seq3755 Length=1024 Score = 246 bits (272), Expect = 2e-59 Identities = 391/552 (71%), Gaps = 24/552 (4%) Strand=Plus/Plus Query 475799 GATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGG---TCAATCA 475855 |||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||| Sbjct 3 GATGAAGCTGTTGCATATGGTGCAGCTGTACAAGCAGCTATTTTATCAGGAGATCAATCA 62 Query 475856 ---GACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 | | ||| | || |||| | | || || |||| | |||||||| | Sbjct 63 TCAGCTGTCAAAG-ACTTATTATTAT-----TAGATGTCTGTCCATTGTCATTAGGCTTA 116 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||||| || || | ||||| || | ||||| |||||||| |||| ||| |||| Sbjct 117 GAAACAGCAGGTGGTGTCATGACAAAATTAATTGAAAGAAATACAACTATACCAACCAAA 176 Query 475973 AAA--TCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCT 476030 ||| ||||| | ||| | || ||| ||||||||||| || ||| || ||| | | Sbjct 177 AAAAATCAAA--TCTTTACTACATATGCTGATAATCAACCAGGTGTTTTAATTCAAGTGT 234 Query 476031 TTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAG 476090 |||||| |||||| || |||||||||||||| | | |||| ||| | | |||| Sbjct 235 ATGAAGGAGAAAGATCCTTAACTAAAGATAATAATTTATTAGGAAAATTTCAATTAGAAG 294 Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150 |||| || || || || ||| | || || |||||||||||||| |||||||||||||| | Sbjct 295 GTATCCCACCAGCACCAAGAAGTGTGCCACAAATTGAAGTTACATTTGATATTGATGCTA 354 Query 476151 ATGGTATTCTTAATGTTACTGCTTGTGATAAATCTA---GTAACAAGAGTAAAAATATAA 476207 ||||||| || ||||| || || | |||||| || |||| | | | || || | Sbjct 355 ATGGTATACTAAATGTAACAGCATTAGATAAAGGTACGGGTAAACAAAATCAA---ATTA 411 Query 476208 CTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAG 476267 |||||||||| || || ||||| | | || | || | |||||||| |||| | Sbjct 412 CTATTACAAATGATAAAGGAAGATTATCAAAGGATGATATCGATCGTATGGTCAATGATG 471 Query 476268 CCAAAGAGTTTGAAGAAGCTGAT-AACAAGAGAAAAGCTGCTATTGATGCAAAGAATGAA 476326 | || | | | |||||| ||| ||||| | |||| | | || || |||| || | Sbjct 472 CAGAAAAATATAAAGAAGAAGATGAACAAAATAAAAACAG-AATCGAAGCAAGAAACAAC 530 Query 476327 CTTGAAAATTAT 476338 || ||||||||| Sbjct 531 CTAGAAAATTAT 542 >seq582 Length=2115 Score = 172 bits (190), Expect = 4e-37 Identities = 409/614 (67%), Gaps = 33/614 (5%) Strand=Plus/Minus Query 297053 ATTGGATGCCATCAAATATTGGTACAAATCATTTTGATAATTGGTTACAATCTTCAGTGG 297112 ||||||| |||||| || | ||| | ||| |||||||| | || | | | Sbjct 2001 ATTGGATTCCATCACATGTAAAAGAAAAAAAATTTCATAATTGGATTAAAGATGCTAAAG 1942 Query 297113 ATTGGTGTATTTCAAGAAGTAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGATG 297172 ||||||||||| |||| |||||||||||| ||||| || || || ||| | ||||| Sbjct 1941 ATTGGTGTATTAGTAGAAATAGATATTGGGGTACACCTATACCTATATGG---TGTGATG 1885 Query 297173 ATGGTGAAGAAATAATT---TGTATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAA 297229 || |||| ||| ||||| | | || | ||| ||||||| || || Sbjct 1884 ATAAAATGGAAACTATTATATGTATAGAGAGTATAAAACATTTAGAAGAATTATCTGGTG 1825 Query 297230 TTGATAATATTAATGATTTACATA---------TTGATAAAATTGATCAAATAAAAATTC 297280 | | ||||||||||||||||||| ||||||||||||| |||||||| | Sbjct 1824 TAAAAAATATTAATGATTTACATAGACATCATATTGATAAAATTGA---AATAAAAAACC 1768 Query 297281 CTTCTCGTAAAGGAAAAGGCATGTTATCTCGTGTTACCGGTGTTTTAGATTGTTGGTTTG 297340 || || | | | | ||| | | | | ||||| ||||||||||||| Sbjct 1767 CTAAAGGTGATAAATATCCAAATTTAAAAAGAATACCTGAAGTTTTTGATTGTTGGTTTG 1708 Query 297341 AATCAGGTTCTATGCCTTATGGTCAAATTCATTATCC-TTTTGAAAATTCCGAAATTTTA 297399 || ||||||||||| || | | || | |||||||| |||| ||| |||| | Sbjct 1707 AAAGTGGTTCTATGCCATACGCTAAAGTACATTATCCATTTTCTAAAGAAAAAAATGAT- 1649 Query 297400 GACACTTCA--CAAGATTATATTGCAGATTTTATAACAGAATCAATTGATCAAACAAGAG 297457 |||| ||| | ||| |||||||| | ||| | | ||||||||||||| Sbjct 1648 -----TTCAATCAAATCTTCCCTGCTGATTTTATTGCTGAAGGATTAGATCAAACAAGAG 1594 Query 297458 GTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTAACAAACCAGCATTTAAAA 297517 | |||||||| |||||||||||| || |||| | ||||| ||| | | ||||| | Sbjct 1593 GATGGTTTTACACTTTATTAGTTATTAGTACATTACTTTTTAATAAAGCCCCTTTTAAGA 1534 Query 297518 ATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAAAAATGTCAAAAAGTAAAG 297577 || |||| || || | ||| ||| |||||||| | |||||| ||| || | Sbjct 1533 ATTTAATATGTAATGGTTTAGTTCTAGCATCTGATGGAAAGAAAATGAGTAAACGTTTAA 1474 Query 297578 GTAATTATCCTGATCC---AAATATTTTGATGGATAAATATGGTGCAGATACTTTACGTC 297634 ||||| |||||||| | |||| || | ||||||||||||| |||| ||||||| Sbjct 1473 AAAATTACCCTGATCCATTATATATATTAA---ATAAATATGGTGCTGATAGTTTACGTT 1417 Query 297635 TTTATTTATTATCA 297648 | |||||| || || Sbjct 1416 TATATTTAATAACA 1403 >seq7523 Length=695 Score = 152 bits (168), Expect = 3e-31 Identities = 252/357 (71%), Gaps = 10/357 (3%) Strand=Plus/Plus Query 295910 TTGGTTGGGATTGCCATGGAGTTCCAATTGAA-ATGT--TGGCTaaaaaaaCTATCGGAT 295966 ||||||||||||| |||||| | || || ||| ||| | | ||| ||| || || Sbjct 83 TTGGTTGGGATTGTCATGGATTACCTATAGAATATGAAATAGAGAAAGAAAATA----AT 138 Query 295967 ATATCACAA-AGA-AAGATTTATTGGAATACGGTATTGATCGTCATAATGATATTTGTCG 296024 || | | || ||| ||||| |||| || ||||||||| | ||||||| | ||| | Sbjct 139 AT-TAATAAGAGAGAAGATATATTAAAAATGGGTATTGATGTTTATAATGAAAAATGTAG 197 Query 296025 TGATATGGTATTAAAATGTACTGATAAATGGTATTCTGATTTTGAGAGAATTGGAAGATG 296084 ||| || ||||||| | || | ||||| | | || | | ||||| ||||| Sbjct 198 AAGTATTGTTTTAAAATATTCTAAAGAATGGGTTACAACAGTTCAACGTATTGGTAGATG 257 Query 296085 GATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAATCTGTTATTTG 296144 ||||||| |||| ||||| |||||||| |||||||||| |||||||||| |||| || Sbjct 258 GATTGATTTTAAAAATGATTATAAAACTATGGATAAAAGTTTTATGGAAAGTGTTTGGTG 317 Query 296145 GTCATTTAAACAACTTTATGAAAAGGAAATGATTTTTGAAGGTTATAAAGTTATGCCTTA 296204 | |||| || | ||| |||| | |||| | || || ||||||||||||||| Sbjct 318 GGTTTTTAGTGAATTATATAAAAATAATTATATTTATAAATCTTTTAAAGTTATGCCTTA 377 Query 296205 TTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAATTATAAAGA 296261 ||| | || |||||||| ||||| ||||||| ||| |||||||||||| Sbjct 378 TTCATGTAAATGTAATACACCTATATCTAATTTTGAATTAAATTTAAATTATAAAGA 434 >seq996 Length=1774 Score = 129 bits (142), Expect = 4e-24 Identities = 225/322 (70%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 318652 TCACCATAAACACATTGAATCAATTTATCATTA-GCATTTCTTACAGTACCATCATATTC 318710 || ||||| | | ||||||| ||| | || || | |||||||||||| | |||||||| Sbjct 1 TCTCCATATAAAAATTGAAT-AATATCTCCATATGAATTTCTTACAGTTCTATCATATTG 59 Query 318711 CACTTTAATATCTTCTAGTATTTTAACTAATTTTCTTTGTACATAACCTGTGTCTGCAGT 318770 || ||| |||||| | ||| | |||| ||||||||| ||| ||||| || | || Sbjct 60 TACCATAACATCTTCCATGGCTTTTATTAATCTTCTTTGTATATACCCTGTTTCAGATGT 119 Query 318771 TTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAAAAGAATTCAGC 318830 |||| ||||||| ||||||||||||||| ||| |||| | |||||||| | ||| Sbjct 120 TTTACATGCAGTATCAATAATACCTTCTCTACCTCCCATTGCATGGAAAAATACTTCTTG 179 Query 318831 AGGTCCTAAACCTTTAATAAATGAACTTGGACA-AAAACCTCTAGCTAAAGCACTGTCAT 318889 ||| ||| || | | | ||||| || || | ||| |||||| | || || | || Sbjct 180 TGGTGTTAATCCACTTAAATATGAA-TTAGATACAAATCCTCTACTTTCAGGACCATAAT 238 Query 318890 CATGTTGTGCAAACATTGGAAGAGTTCTATTATTAAATCTCTTTTGAATTCTTTTATCTT 318949 || || ||| ||| | || ||||| |||||| | | | |||||||| ||| Sbjct 239 CAAATTTAATAAAATGTGGTAAAGATCTATGATTAAAACCAAATGGTATTCTTTTTCCTT 298 Query 318950 CGACAATAACTTGACCAATACA 318971 | ||| | |||||| | ||| Sbjct 299 CAACATTTTGTTGACCTACACA 320 >seq1904 Length=1198 Score = 102 bits (112), Expect = 5e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 753045 TTAACAACAACTTCTGTATCAGTTTGTCCATAAAAATTATAACCATTATTTAATAATTCA 753104 ||| | || || ||||||||||| | | | ||| | | ||| |||||||| | Sbjct 444 TTAGCTACTACCTCTGTATCAGTATTTGATTTAAATGGAATATTATTTTTTAATAAAA-A 386 Query 753105 TGCTTTAATTCAT-TATAATTTTCAATGATACCATTATGAACCATAGCTAATTTTTTATT 753163 || ||||||| | ||||||||||||| |||||||||||||| ||| || || | Sbjct 385 TGTTTTAATTTCTCTATAATTTTCAATTATACCATTATGAACTATACTTATACGTTCACC 326 Query 753164 TTCATCAGTGTGGGGATGAGCATTTTCCACAGTTTTTTCACCATGTGTTGCCCATCTTGT 753223 | |||| || |||||||||||||| ||||||| |||||||||||||||| ||| Sbjct 325 ATAATCAACATGTGGATGAGCATTTTCATCAGTTTTACATCCATGTGTTGCCCATCGTGT 266 Query 753224 ATG 753226 ||| Sbjct 265 ATG 263 >seq466 Length=2242 Score = 102 bits (112), Expect = 5e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 318636 TGTATTAATACCATTATCACCATAAACACATTGAATCAATTTATCATTAGCATTTCTTAC 318695 || || |||||||| |||||||| | | ||||||| | | || || ||||||| || Sbjct 1158 TGGATCAATACCATCTTCACCATATAAAAATTGAATAATTGAATTATCTTCATTTCTAAC 1099 Query 318696 AGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCTTTGTACATA 318755 ||| |||||||| | | | ||| ||| | ||||| ||| |||||| | ||| Sbjct 1098 AGTGCCATCATAATGTAATATAACTGATTCCATACATTTAATTAAACATCTTTGAATATA 1039 Query 318756 ACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTG 318815 ||||| | || ||||| | ||| |||| || | |||||||||||||| |||| || Sbjct 1038 ACCTGATTTGGCGGTTTTCACAGCTGTATCTATTAAACCTTCTCTTCCTGACATACAATG 979 Query 318816 GAAAAAGAATTCAGCAGGTCCTAAACCTT 318844 ||||| |||| |||| |||||||| Sbjct 978 AAAAAAATATTCTTGTGGTCTTAAACCTT 950 >seq2659 Length=1209 Score = 100 bits (110), Expect = 2e-15 Identities = 121/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 629926 AGAA-ATGACGCATTTTTTATTTTATGGACCTCCTGGTACAGGTAAAACATCTGCAATTT 629984 |||| ||| | ||||| ||||| |||| ||||||||||||||||||||||| ||||| Sbjct 164 AGAATATGCCTCATTTAATATTTCATGGTCCTCCTGGTACAGGTAAAACATCAGCAATAA 223 Query 629985 TAGCTATGGGACGAGAAATATTT---AAAGAACATTTTCCAACGAGAGTAATAGAATTTA 630041 ||| ||| | ||| | ||| || ||| || | ||| ||| ||||||| | Sbjct 224 ATGCTTTGGCTCACGAATTGTTTGGAAAGGAAAATATAAGTGAGAGGGTATTAGAATTGA 283 Query 630042 ATGCCTCTGATGATAGAGGAATTAATGCAGTTAGAGAAAAAAT 630084 | || |||||||| ||||| || |||| || ||||||||||| Sbjct 284 ACGCTTCTGATGACAGAGGTATAAATGTGGTAAGAGAAAAAAT 326 >seq5672 Length=825 Score = 96.9 bits (106), Expect = 2e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 269319 AAATGGTGTCGCATCACCATATACTCCTTTAATAGCACATACTTTTCCTAATAGACATTC 269378 ||| ||||| |||||||| | | |||||| ||| || ||||||||| || |||||| Sbjct 809 AAAAGGTGTAGCATCACCTTCTCCTCCTTCAATGGCTGCAACTTTTCCTGTTAAACATTC 750 Query 269379 AATCAATTGTCCAATGGTCATACGTTTTGGCATACAATTAGGATTAATAATAATATCTGG 269438 || ||| |||||||| |||||||| || | || || || ||||||||||| || Sbjct 749 AACCAAATGTCCAATAGTCATACGAGAAGGAACTGCATGTGGGTTCATAATAATATCAGG 690 Query 269439 CACAAGTCCAGATTTAGTAAATGGCATATCTGCTCTATGAATTTTAAATCCAACTGTACC 269498 | || ||| | | |||||||||||||| || | | | ||| |||| ||||| Sbjct 689 AAAAATACCAAGTGAACTAAATGGCATATCTTCTGTTCTATATGTAATACCAATAGTACC 630 Query 269499 TTTTTG 269504 ||||| Sbjct 629 CTTTTG 624 >seq1017 Length=1759 Score = 93.3 bits (102), Expect = 3e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 825446 GGAATTCCAGGATGGCATATTGAATGTTCTACAATGATTCATAAAACAATAGGAAATCAT 825505 |||| ||||| ||||||||||||||||| || ||| ||| | | ||||| || | Sbjct 1249 GGAAGACCAGGTTGGCATATTGAATGTTCAACTATGGCAAGTAATATATTAGGAGATGTT 1190 Query 825506 CTTGATATACATTTTGGAGGAATTGATTTAAAATTTCCTCATCATCACAATGAA 825559 | ||||| ||| |||||| |||||||||| ||||||||||||| | |||||| Sbjct 1189 TTAGATATTCATAGTGGAGGTATTGATTTAAGATTTCCTCATCATGATAATGAA 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267074400191888