Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3755 235 7e-57 >seq3755 Length=1024 Score = 235 bits (260), Expect = 7e-57 Identities = 387/551 (70%), Gaps = 8/551 (1%) Strand=Plus/Plus Query 196382 GATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAAT 196441 |||||||| ||||| |||||||| || || || || |||||| | ||||| | | |||| Sbjct 3 GATGAAGCTGTTGCATATGGTGCAGCTGTACAAGCAGCTATTTTATCAGGAGAT--CAAT 60 Query 196442 AATAAC--GTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAA 196499 || | ||| |||| | | || | ||||| || | || | || | |||| Sbjct 61 CATCAGCTGTCAAAGACTTATTATTATTAGATGTCTGTCCATTGTCATTAGGCTTAGAAA 120 Query 196500 CAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGG 196559 |||| |||||||| ||||| ||| | ||||| || || |||||||| || || || || Sbjct 121 CAGCAGGTGGTGTCATGACAAAATTAATTGAAAGAAATACAACTATACCAACCAAAAAAA 180 Query 196560 AACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAG 196619 | ||| ||||| | || ||| | |||||||||||||||||| |||||||| ||||||| Sbjct 181 ATCAAATCTTTACTACATATGCTGATAATCAACCAGGTGTTTTAATTCAAGTGTATGAAG 240 Query 196620 GAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG-AACTTTCGATTTGACGGGGATT 196678 ||||| | ||| | || ||||| || || | || || |||| ||| || || || Sbjct 241 GAGAAAGATCCTTAACTAAAGATAATAATTTATTAGGAAAATTTCAATTAGA-AGGTATC 299 Query 196679 CCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGA 196738 ||| | ||||| ||| |||| ||||| ||| | ||| || ||||| || || ||||| Sbjct 300 CCACCAGCACCAAGAAGTGTGCCACAAATTGAAGTTACATTTGATATTGATGCTAATGGT 359 Query 196739 ATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACC 196798 || ||||| || ||||| || || | | | || ||| | | ||| ||||| Sbjct 360 ATACTAAATGTAACAGCATTAGATAAAGGTACGGGTAAACAAAATCAAATTACTATTACA 419 Query 196799 AATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAG 196858 ||||| || || | | || ||||| || || || |||||||| | ||||| ||||| Sbjct 420 AATGATAAAGGAAGATTATCAAAGGATGATATCGATCGTATGGTCAATGATGCAGAAAAA 479 Query 196859 TACAGGGAAGAAGACGAGGTATATGAGAAACAG-ATGAAAGCTATAAATGATCTAGAAAA 196917 || | |||||||| || | || | |||||| || |||| | ||| | |||||||| Sbjct 480 TATAAAGAAGAAGATGAACAAAAT-AAAAACAGAATCGAAGCAAGAAACAACCTAGAAAA 538 Query 196918 TTCTACTTATA 196928 || | ||||| Sbjct 539 TTATTGTTATA 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657650601200320