Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq6281 150 3e-31 >seq6281 Length=778 Score = 150 bits (166), Expect = 3e-31 Identities = 339/500 (68%), Gaps = 21/500 (4%) Strand=Plus/Minus Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 |||||| || ||| |||| |||||||||| || ||||| ||||||| | ||| ||||| Sbjct 494 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 435 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATA---ATATTTTTCTTGTAT--TAATTCG 17977 | ||| ||| |||||||| |||| | | | |||| | || ||| Sbjct 434 GTCCATCCAATTGAATGGATT-----TTTTGAATGGAAAATTTTAGAGCATCCTAAACAT 380 Query 17978 TATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACC 18036 | ||||||||||||||| |||||||| | |||||| ||||| || || |||||||||| Sbjct 379 TCTAATAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACC 321 Query 18037 TAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTT 18096 || || | |||| | ||| ||||| | | || | || |||| ||||| Sbjct 320 TATTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTT 261 Query 18097 TATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAA 18156 | || ||| |||| | || ||| | ||||||| || | ||||| | ||| Sbjct 260 AACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAA---ATTAA 204 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 || |||||| || |||| ||||||||||| ||||||||| |||||||| ||||| Sbjct 203 GCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAA 144 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || | | | || | |||||| | |||||| || | || |||| | || || Sbjct 143 ACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAA 84 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 ||| || ||||| || || |||| || ||||||||||| || ||| | ||| Sbjct 83 TATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAA--TGAATTAGT--ATCAT 28 Query 18337 T-ATCCATTTTTGTGCCCAT 18355 | ||||||||| ||||||| Sbjct 27 TAATCCATTTTGCTGCCCAT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731636373809600