Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5544 165 2e-35 seq6281 159 7e-34 seq18582 86.0 1e-11 >seq5544 Length=836 Score = 165 bits (182), Expect = 2e-35 Identities = 249/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 50004 ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 50063 ||||| ||| ||||| |||||| ||||| | || ||| |||||||||||||| | | Sbjct 821 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTATAGCATGA 762 Query 50064 AATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATT 50123 ||||| | | |||| | ||||||||| ||| || Sbjct 761 AATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATAGGTT 702 Query 50124 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC 50183 || ||||| | | ||| | |||||||||||| |||||||||| | ||||||||| Sbjct 701 TCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTATT 642 Query 50184 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243 ||||| || || ||| | | |||||||| |||| ||||||||| |||||| Sbjct 641 TGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTGCA 582 Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 50303 || |||||||| || | || ||||||||||| ||||| || || || || || || | Sbjct 581 AAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAATCT 522 Query 50304 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTA 50363 | | |||| | |||||||| | ||||||| |||||||||||| ||| | | ||| || Sbjct 521 TTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCTTG 462 Query 50364 TA 50365 || Sbjct 461 TA 460 >seq6281 Length=778 Score = 159 bits (176), Expect = 7e-34 Identities = 318/456 (70%), Gaps = 20/456 (4%) Strand=Plus/Minus Query 49580 TGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA 49639 ||| ||||| | ||| ||| ||||||||||| | || || ||||| | | | Sbjct 443 TGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAA-ATTTTAGAGCATCCTA 385 Query 49640 TACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCA 49698 |||| |||||||||||| || |||||||| | |||||| ||||| | | | |||||| Sbjct 384 AACATTCTAATAATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCA 325 Query 49699 TACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagctt 49758 |||| | ||| | | ||||||||| ||| ||||| | |||| | ||||||||||| Sbjct 324 TACCTATTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTT 265 Query 49759 gtttaattatcataattatattatt--ttttgataattta-tatttaatatgattcgcat 49815 ||||| || || || || ||| || || | |||| ||| ||||| | || Sbjct 264 CTTTAACAAT-AT-TTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT----AT 211 Query 49816 atattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAA 49875 | ||||| || |||||| ||||||| || || || ||| ||| ||||||||||||| Sbjct 210 AAATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAA 151 Query 49876 AAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 | ||||| || || ||| || | | ||||||| |||||| || | ||| |||| | Sbjct 150 ATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATAGCACAAAAGCTACCA 92 Query 49935 GAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT-- 49992 || ||||| || || ||||| ||| |||| ||| ||| | ||| || |||| Sbjct 91 CTGAATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAA--ATGAATTAG 34 Query 49993 TATCATCTAATATCCAATTTATAGCCCAATCTGCtt 50028 |||||| || ||||| ||| ||||| ||||| Sbjct 33 TATCAT-TA--ATCCATTTTGCTGCCCATAATGCTT 1 >seq18582 Length=377 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 129701 AATGGATTAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAAT 129760 |||| | || |||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 313 AATGCAATAGAATATTTACATAAAATAAAAATAGTACACAGAGATTTAAAACCAGAAAAT 254 Query 129761 ATATTAT 129767 || |||| Sbjct 253 ATTTTAT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984155122830600