Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6281 199 7e-46 seq5544 143 5e-29 seq18582 86.0 1e-11 >seq6281 Length=778 Score = 199 bits (220), Expect = 7e-46 Identities = 357/508 (70%), Gaps = 20/508 (4%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | || |||| |||||||||||||||||||||| | ||| |||| Sbjct 495 ATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTA 436 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATA-T 38948 | | ||| ||| ||||||||||| | || || ||||| | | | |||| | Sbjct 435 AGTCCATCCAATTGAATGGATTTTTTGAATGGAAA-ATTTTAGAGCATCCTAAACATTCT 377 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||||||| || |||||||| | |||||| |||| | | | |||||||||| | | Sbjct 376 AATAATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATACCTATT 317 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | ||||||||| ||| ||||| | |||| | ||||||||||| ||||| Sbjct 316 AAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACA 257 Query 39069 atcataattatattatt--ttttgataattta-tatttaatatgattcgcatataGTAAA 39125 || || || || ||| || || | |||| ||| ||||| | ||| | ||| Sbjct 256 AT-AT-TTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT----ATAAATTAAG 203 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||| ||||||| ||||| || ||| ||| |||||||||||||| ||||| Sbjct 202 CAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAA 143 Query 39186 CC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 || || ||| || | | ||||||| |||||| || | ||| |||| | || || Sbjct 142 CCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAA 84 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCT 39302 ||| || || ||||| ||| |||| ||| ||| | ||| || |||| |||||| Sbjct 83 TATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAA--ATGAATTAGTATCAT-- 28 Query 39303 AAAATCCAATTTATGGCCCAATCTGCTT 39330 |||||| ||| ||||| ||||| Sbjct 27 -TAATCCATTTTGCTGCCCATAATGCTT 1 >seq5544 Length=836 Score = 143 bits (158), Expect = 5e-29 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 39424 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAAT 39483 |||| ||||| | | ||| | |||||||||||| |||||||||| ||||||||| Sbjct 703 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 644 Query 39484 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 ||||| || || ||| | | |||||||| |||| ||||||||| ||||| Sbjct 643 TTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTG 584 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || |||||||| |||| || ||||||||||| ||||| || || || || || || Sbjct 583 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAAT 524 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | |||| | |||||||| | ||||||| ||||||||| || ||| | | ||| | Sbjct 523 CTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCT 464 Query 39664 TATA 39667 | || Sbjct 463 TGTA 460 >seq18582 Length=377 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 109114 AATGGATTAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAAT 109173 |||| | || |||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 313 AATGCAATAGAATATTTACATAAAATAAAAATAGTACACAGAGATTTAAAACCAGAAAAT 254 Query 109174 ATATTAT 109180 || |||| Sbjct 253 ATTTTAT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904844591464800