Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq170 134 4e-26 >seq170 Length=2847 Score = 134 bits (148), Expect = 4e-26 Identities = 337/500 (67%), Gaps = 13/500 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| | ||||| ||||| ||||| |||| || || | Sbjct 1920 CTATCAAATCTACCTGGTCTAGTAATAGCTGGATCTAAAATATCTACTCTATTAGTACCA 1861 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTG 288965 || || ||||| | || ||| | | | | |||||||||||| | || ||||| Sbjct 1860 GCTAAAACAACTACCTTATCATTAGATGTA-TGAAATCCATCCATTTCTACTAGCATTTG 1802 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCttt 289024 ||| | ||| | ||| ||||||||||| || | | | ||| | | | | |||| Sbjct 1801 ATTTAATGTGTTTTCTCTTTCATCATTACCTCCACCAGCAAAACCACCTTTTGAT-CTTT 1743 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 || | || |||||||||||||| || || ||||| | | | || | || || ||| || Sbjct 1742 TTCTCCCGACAGCATCAATTTCATCTATAAAAATTATAGAAGGTGCATGTTTTCTTGCTT 1683 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||||||| || | |||| || | ||||||| | | ||| | ||| ||| Sbjct 1682 GAGCAAATAATTCTCGAACCCTTGATGGACCTATACCAACAAAAACTTCAATAAAATCAC 1623 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | || | | || |||| ||||||||||| || ||||| || | || || | | Sbjct 1622 TACCGCTAATATTAAAAAATGGAACATTTGCTTCTCCAGCTACAGCTTTGGCTAGTAAAG 1563 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCA 289263 | || || || || || | || ||||| | || || |||| ||| || |||| | Sbjct 1562 TTTTTCCAGTACCTGGAGCACCACATAATAATGCACCTTTAGGTATTTTAGCACCCA--A 1505 Query 289264 GACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | || |||||| || | |||||||| ||||||| |||| || ||| | ||| || Sbjct 1504 TATTTCATATTTGGTTGGATTTTTTAAAAAATCTACAAATTCCATAATTTCTTCTTTAGC 1445 Query 289323 CT-CATCACATCCTGCTACA 289341 | | ||| | || |||||| Sbjct 1444 TTGCTTCATA-CCAGCTACA 1426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471331902031772