Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq11001 132 6e-26 seq9540 116 5e-21 seq5718 93.3 5e-14 seq6080 84.2 3e-11 >seq11001 Length=546 Score = 132 bits (146), Expect = 6e-26 Identities = 313/467 (67%), Gaps = 23/467 (5%) Strand=Plus/Plus Query 168658 ATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGAC-TG- 168715 ||||||| || |||||||| ||||||||||||||| |||||| |||||| | || Sbjct 1 ATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAATATGC 60 Query 168716 -TGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTAC 168774 ||||| || | | |||| || || ||||||| ||| ||||| | |||| Sbjct 61 ATGATAATTATGAAAATA---AAGGTGTTGATCAATTAA---AAAATATAATAAATTTAA 114 Query 168775 ACAACAAT---CCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCACAACTTG 168831 || ||| || || ||||||||| | | | ||| ||||| | | |||| Sbjct 115 TTAAAAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTG 174 Query 168832 ATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTA----AGGAAAAAA 168887 | |||||| | || |||||||| | |||| ||||||||||| | | |||| Sbjct 175 ACCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTCGATGGAAAAT 234 Query 168888 TCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTAT 168947 | ||| | ||| | ||||||||| ||| |||||||||| |||||||||||| | Sbjct 235 T--ATCATGTATTAT-----GTATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTTTT 287 Query 168948 AATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCCT 169007 ||||||| | |||||| |||| || | | || | || ||||||||| ||| Sbjct 288 AATATTGCTTCTTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCT 347 Query 169008 GGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTA 169067 | | ||||| || ||| ||| ||| || || ||| || || | || |||| Sbjct 348 GCCGAATTTATACACGTTTTAGGAAATGCGCATGTTTATAATAATCACATCGATAGTTTA 407 Query 169068 AAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 || ||||| | || |||| ||||||| | || |||| ||||||| Sbjct 408 AAAATTCAACTTAATAGAATACCATATCCATTCCCAACACTTAAATT 454 >seq9540 Length=598 Score = 116 bits (128), Expect = 5e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 193791 AAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATG 193850 ||||| ||||| || |||||||||||||| | | |||||||||||| | |||||||| Sbjct 470 AAAATATTTATTGGACCAACTTATTATCAAAGATTAAAACATATGGTTGAAGATAAAATA 411 Query 193851 CATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 193909 ||||| |||||| |||| | | |||| ||||| ||||||||| || | || Sbjct 410 CATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAACCAACAGAAGGAAGATC 352 Query 193910 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGC 193969 || ||| ||| ||||||||||||||||||| | ||| ||||| || ||||| | Sbjct 351 AAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACATGGATC 292 Query 193970 TACTCAATTCTTGAATGAAAGAATGTTT 193997 | | || | || || |||||| | ||| Sbjct 291 TGCCAAAATGTTAAAAGAAAGATTATTT 264 >seq5718 Length=822 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 192930 GAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGT---TACCACAGATATT 192986 || ||| || ||||| |||| |||| ||||||||||| | || ||| | | ||| Sbjct 613 GATACATTAGCTCATTTATTATATTACCCACAAAAACCATTAGTATGTACAAAGGCTATG 672 Query 192987 GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCT 193046 | || ||||| ||||| | | ||| |||||||||||| ||||| ||||| Sbjct 673 G-AATATTTACGTT-TTAGAGAACTC-CCAGCTGGTATTAATGCAATTGTAGCTATTATG 729 Query 193047 TGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193106 || ||||| ||||||||||||||||| ||| | ||| | || || | |||||||| | Sbjct 730 TGTTATACAGGTTATAATCAAGAAGATAGTTTGATTATGAACCAATCATCTATTGATCGT 789 Query 193107 GGATTATTTGGTACTATAACTTATAATACATAT 193139 || |||||| | | | || |||| ||| ||| Sbjct 790 GGTTTATTTAGAAGTGTATTTTATCGTACTTAT 822 >seq6080 Length=793 Score = 84.2 bits (92), Expect = 3e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 193758 TATTGTGGGTTTACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTAT 193817 |||| ||| || || ||| || | |||| | || ||||| || |||| |||||| Sbjct 187 TATTCTGGATTAACAGGTGAACCTTTAGAAACATATATATTTATGGGACCAATATATTAT 246 Query 193818 CATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGA-CAAGTGAC 193876 || | ||||||||||| | |||||||| ||||||||| | ||| |||| | Sbjct 247 CAAAAATTAAAACATATGGTACAAGATAAAATCCATGCTAGAGCTAGAGGACCAAGACAA 306 Query 193877 TACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGA 193936 | | ||| ||||||||| | ||| | || ||| |||||||||||||| || || Sbjct 307 TTACTCACA-AGACAACCAACTGAAGGTAGATCAAAAGAAGGAGGTTTAAGATTAGGTGA 365 Query 193937 AATGGAGAAAGACTGTATTTTAGTTCATGGTGCTA 193971 |||||| | ||| ||| | ||| |||||| || Sbjct 366 AATGGAAAGAGATTGTTTAATAGCATATGGTGTTA 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634973104571680