Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq9540 109 7e-19 seq5718 93.3 6e-14 >seq9540 Length=598 Score = 109 bits (120), Expect = 7e-19 Identities = 162/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 201904 gaaaaaT-TCAAAGT--AAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATA 201960 ||| ||| | ||||| ||||| ||||| || ||||| || ||||| | | ||||||| Sbjct 487 GAAGAATGTTAAAGTCCAAAATATTTATTGGACCAACTTATTATCAAAGATTAAAACATA 428 Query 201961 TGGTTAAGGATAAAATGCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAA 202019 ||||| | |||||||| ||||| |||||| || | | |||| | |||||| | ||| Sbjct 427 TGGTTGAAGATAAAATACATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAA 369 Query 202020 CCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGT 202079 |||| || | || || |||||| ||||||||||||||||||||| ||||||| Sbjct 368 CCAACAGAAGGAAGATCAAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAGATTGT 309 Query 202080 ATTTTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAATGTTT 202124 || | ||||| | | || | ||||| |||||| | ||| Sbjct 308 ATGATATCACATGGATCTGCCAAAATGTTAAAAGAAAGATTATTT 264 >seq5718 Length=822 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 201146 TGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGT 201205 ||||||||||||||||||||| ||| ||||| || || || ||||||||||||||| | Sbjct 702 TGGTATTAATGCAATTGTAGCTATTATGTGTTATACAGGTTATAATCAAGAAGATAGTTT 761 Query 201206 TATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 ||| | || || |||||||||| | |||||||| Sbjct 762 GATTATGAACCAATCATCTATTGATCGTGGTTTATT 797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655069032604000