Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq9540 111 2e-19 seq5718 84.2 3e-11 >seq9540 Length=598 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 193344 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 193403 ||||| ||||| || ||||||||||| || | | ||||| |||||| | |||||||| Sbjct 470 AAAATATTTATTGGACCAACTTATTATCAAAGATTAAAACATATGGTTGAAGATAAAATA 411 Query 193404 CATGCTAGAAGTCATGGGCAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 193462 ||||| |||||| || | | | |||| ||||| ||||||||| || | || Sbjct 410 CATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAACCAACAGAAGGAAGATC 352 Query 193463 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGC 193522 || ||| ||| ||||||||||||||||||||| ||| ||||| || ||||| | Sbjct 351 AAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACATGGATC 292 Query 193523 TACTCAATTCTTAAATGAAAGAATGttt 193550 | | || | ||||| |||||| | ||| Sbjct 291 TGCCAAAATGTTAAAAGAAAGATTATTT 264 >seq5718 Length=822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 192493 CTCATACATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTA 192549 ||||| |||| |||| |||||||||||| | || ||| | | ||| | || ||||| Sbjct 623 CTCATTTATTATATTACCCACAAAAACCATTAGTATGTACAAAGGCTATGG-AATATTTA 681 Query 192550 ATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTG 192609 ||||| | | ||| |||||||||||| ||||| ||||| || ||||| | Sbjct 682 CGTT-TTAGAGAACTC-CCAGCTGGTATTAATGCAATTGTAGCTATTATGTGTTATACAG 739 Query 192610 GCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTG 192669 | ||||| |||||||| ||| | ||| | || || | |||||||| | || |||||| Sbjct 740 GTTATAATCAAGAAGATAGTTTGATTATGAACCAATCATCTATTGATCGTGGTTTATTTA 799 Query 192670 GCACTATAACTTATAATACATAT 192692 | | | || |||| ||| ||| Sbjct 800 GAAGTGTATTTTATCGTACTTAT 822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628328844380160