Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3755 215 4e-50 seq1017 87.8 1e-11 seq1904 86.0 5e-11 >seq3755 Length=1024 Score = 215 bits (238), Expect = 4e-50 Identities = 359/513 (70%), Gaps = 17/513 (3%) Strand=Plus/Minus Query 281296 ttttttCTTGTT-ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTT 281354 |||| | ||||| |||| |||||| | ||| || || || | | ||| | || || | Sbjct 507 TTTTATTTTGTTCATCTTCTTCTTTATATTTTTCTGCATCATTGACCATACGATCGATAT 448 Query 281355 GATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTT---- 281410 ||| | || |||||||| || ||| ||||||||||| ||| ||||||| Sbjct 447 CATCCTTTGATAATCTTCCTTTATCATTTGTAATAGTAAT----TTGATTTTGTTTACCC 392 Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || |||||| || || ||||| || |||||||| ||||| | ||||||||| ||| Sbjct 391 GTACCTTTATCTAATGCTGTTACATTTAGTATACCATTAGCATCAATATCAAATGTAACT 332 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 |||||||| || || | ||| | || |||||||| ||||| || | |||| |||| | Sbjct 331 TCAATTTGTGGCACACTTCTTGGTGCTGGTGGGATACCTTCTAATTGAAATTTTCCTAAT 272 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 ||||||||||||||| || || ||| || || | | ||| || ||| | | | Sbjct 271 AAATTATTATCTTTAGTTAAGGATCTTTCTCCTTCATACACTTGAATTAAAACACCTGGT 212 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 |||||||| | ||| || ||||| | | |||||| || || ||||| ||||| Sbjct 211 TGATTATCAGCATATGTAGTAAAGATTTGATTTTTTTTGGTTGGTATAGTTGTATTTCTT 152 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 ||||| | || ||||| | |||||| ||||||||||| || | || | ||| |||| Sbjct 151 TCAATTAATTTTGTCATGACACCACCTGCTGTTTCTAAGCCTAATGACAATGGACAGACA 92 Query 281711 TCAACTAGGACAATA---TTTTGA-AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGC 281766 || | || | |||| ||||| || | | || | | || | ||||||||| Sbjct 91 TCTAATA--ATAATAAGTCTTTGACAGCTGATGATTGATCT--CCTGATAAAATAGCTGC 36 Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 ||| | ||| ||||||||||||||||||||||| Sbjct 35 TTGTACAGCTGCACCATATGCAACAGCTTCATC 3 >seq1017 Length=1759 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 917175 TTCGTTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 917234 ||| |||| ||||||||||||| | ||||| || || ||| ||||||||| | | || Sbjct 1136 TTCATTATCATGATGAGGAAATCTTAAATCAATACCTCCACTATGAATATCTAAAACATC 1195 Query 917235 TCCTAATGT-TTTCTTGATCATGGCTGAGCATTCAATATGCCAACCAGGT 917283 ||||||| | || |||| ||| | ||| ||||||||||||||||| ||| Sbjct 1196 TCCTAATATATTACTTG-CCATAGTTGAACATTCAATATGCCAACCTGGT 1244 >seq1904 Length=1198 Score = 86.0 bits (94), Expect = 5e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 584825 TAATTTTCAATTATACCATTGTGTATTAATGAGAAACGTCCACTAGCATCAAAATGAGGA 584884 |||||||||||||||||||| || | || | |||| ||| | ||||| ||| ||| Sbjct 369 TAATTTTCAATTATACCATTATGAACTATACTTATACGTTCACCATAATCAACATGTGGA 310 Query 584885 TGAGCGTTCTCAATAGTTTTTTCACCATGCGTTGCCCATCTAGTATGACCAATTGCTATA 584944 ||||| || ||| |||||| ||||| |||||||||| ||||| ||||| ||||| Sbjct 309 TGAGCATTTTCATCAGTTTTACATCCATGTGTTGCCCATCGTGTATGTGCAATTCCTATA 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739365889244856