Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11001 123 6e-23 seq2350 116 9e-21 seq996 100 7e-16 >seq11001 Length=546 Score = 123 bits (136), Expect = 6e-23 Identities = 160/216 (74%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||||||||| | |||||||| |||| ||| ||||| Sbjct 220 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACA 161 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAA-TAAGTTCTTCACA 59055 |||||||||| |||| ||| | | | ||| |||||||||| ||| || | | Sbjct 160 TTCCATGCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTA-T 102 Query 59056 ATGTTTTATTTGGTCAAATCCATTAGTATATTCAGTAT-TGGCATCAATG--TATTTATC 59112 || ||||| ||| |||| || ||| | | | | ||| |||| || |||| | | Sbjct 101 ATTTTTTAATTGATCAACACCTTTATTTTCATAATTATCATGCATATTTGTATATTCAGC 42 Query 59113 TCCCCAATAACGCCATTGAAAACCATATACAGGTCC 59148 ||| ||| | ||||||||||||||| | |||||| Sbjct 41 TCCGAAATGTCTCCATTGAAAACCATAAATAGGTCC 6 >seq2350 Length=1279 Score = 116 bits (128), Expect = 9e-21 Identities = 343/517 (66%), Gaps = 34/517 (7%) Strand=Plus/Plus Query 279057 AATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCT---C 279113 |||||| ||| || || ||| | || ||||| || ||||| | |||||| | | Sbjct 470 AATTAT-TGGAATACCTAAATTAGAAGATGCTAATGATGCTGG---TAGTAAATATAGTC 525 Query 279114 AAGAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACAT-TTGCGATTGCTGGT 279172 |||||||| | || || | || || |||||| |||| |||| |||| | |||||| Sbjct 526 AAGAATGTACATTGATTTTAACAGAAGGAGATAGTGCTAAAACATCTTGCT-TAGCTGGT 584 Query 279173 TTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAAT 279232 || ||| || | ||| | ||||||||||| || |||||||||| ||||||| || | ||| Sbjct 585 TTGTCTATTGTAGGTAGAGATAAATATGGTGTTTTTCCTTTAAAAGGTAAATTATTAAAT 644 Query 279233 GCTCGTGATAAAATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTG-AATT 279291 | | | ||| | | |||||| ||| | | | |||| | |||| Sbjct 645 GTTAGAGAT--------------GCGTCATTTAAA-CAACTTATGGATAATAAAGAAATT 689 Query 279292 GATTAATTTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGAT-ACATCAA 279350 | | || | || || |||| ||||| | | ||| | |||||| | || || Sbjct 690 CAAAATATTTTTAGAATTA-TGGGTTTAGATATTACTGATAAAAATAAAGATGATATTAA 748 Query 279351 --GTTTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACAT 279408 ||||| |||||||| | || ||| |||| || ||||||| ||||| ||||| Sbjct 749 AGGTTTAAGATATGGTTCCTTAATGATTATGACTGATCAAGATTATGATGGTTCACACAT 808 Query 279409 TAAAGGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTTGAATCAAAA--- 279465 |||||||||| | ||||| | | ||| || |||||| || || || || || Sbjct 809 TAAAGGATTACTTATTAATATGATACATAAATTTTGGCCAAGTTTATTAAAACATAAAGG 868 Query 279466 TTTTGTAAGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGT 279525 ||| | || | ||| |||||||||| | || | | ||||| | ||||| | Sbjct 869 TTTCCTTAGCGAATTTGTAACACCAATTGTAAAAGTACAAAAAGGAAGTCAAGAATATTC 928 Query 279526 ATTTTATTC-ATTGCAGAAGTTTGAACAATGGAAAGA 279561 |||| | | ||||| ||| | ||||||||||||||| Sbjct 929 TTTTTTTACTATTGCTGAA-TATGAACAATGGAAAGA 964 >seq996 Length=1774 Score = 100 bits (110), Expect = 7e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| || | |||| || | || |||||||| || ||| | ||||||||| Sbjct 1679 AGACATATGACAGATGAAGATTATATTTTATTTAATAGGCAGCCTTCATTACATAAAATG 1620 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| |||||| | ||| ||||| | | |||||||| |||||| || Sbjct 1619 AGTATTATGGGTCATAAGGCTAAAATATTACCATATTCAACATTTCGTTTAAATTTATCA 1560 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||| ||||||||||||||||| | || || ||||| Sbjct 1559 GTTACATCTCCATATAATGCCGATTTCGATGGAGATGAAATGAACTTACACTTAGCTCAA 1500 Query 305486 TCA 305488 ||| Sbjct 1499 TCA 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186421153259516