Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5544 208 1e-48 >seq5544 Length=836 Score = 208 bits (230), Expect = 1e-48 Identities = 293/408 (72%), Gaps = 9/408 (2%) Strand=Plus/Minus Query 39782 GTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 ||||||||| ||||| || |||||| ||||| || |||||| ||| || || Sbjct 830 GTATCATTA---ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTT 774 Query 39842 TCTATAGCATTAAAGAGAT--AATGTTT-TTCATCACTATCTTTAACATATGTATCTATT 39898 |||||||||| ||| | || ||| ||| || ||| ||||||| ||| |||| ||| Sbjct 773 TCTATAGCATGAAATAAATTTAATCTTTCTTTTTCA---TCTTTAATATAATTATCAATT 717 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 || | |||||| |||||||||| || ||||| | || || ||||| ||||| | Sbjct 716 AATAAACTATAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTT 657 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 ||||||| || ||||| |||||| ||||| | |||||||| || ||||| Sbjct 656 TTTGCTTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATA 597 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 |||||||| || ||||||||||| || ||||| || ||||||| ||| |||| | || Sbjct 596 CCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTC 537 Query 40079 AATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC 40138 ||||| | | || || | ||| | |||| ||| | |||||| ||||||||||| || Sbjct 536 AATTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAA 477 Query 40139 GCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGA 40186 || || || || ||||| | | ||| | ||| ||||| ||||||| Sbjct 476 GCTTCAGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686687649711840