Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11001 178 1e-39 seq5544 159 3e-34 seq1776 123 2e-23 >seq11001 Length=546 Score = 178 bits (196), Expect = 1e-39 Identities = 331/483 (69%), Gaps = 6/483 (1%) Strand=Plus/Plus Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCT 40934 || ||| ||||||| ||||| | | ||||||| ||||| ||||| | |||| | | Sbjct 6 GGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAATATGCATGAT 65 Query 40935 GATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGAT 40994 ||||| |||||||| | ||||||||| | | ||| || |||||| ||| Sbjct 66 AATTATGAAAATAAAGGTGTTGATCAATTAAAAAATATAATAAATTTAATTAAAAATGAT 125 Query 40995 CCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCA 41054 || || || | || | ||||| || ||||| || || | | |||||| Sbjct 126 CCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCAAATGGCA 185 Query 41055 TTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAA 41114 || || ||||||||| | |||||||| ||||| |||| | |||| || | |||||| Sbjct 186 TTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTCGATGGAAAATTATCATGTATT 245 Query 41115 TTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCT 41174 |||||||||| ||| |||| | |||||||| || || ||||| || || |||| || Sbjct 246 ATGTATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTTTTAATATTGCTTCTTATTCT 305 Query 41175 CTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACG 41234 | | || ||||||||||||| || ||||| |||||| |||||| | ||| Sbjct 306 ATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCCGAATTTATACACGTT 365 Query 41235 TTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGA 41294 |||||| ||| ||| |||| | ||||||||| || |||| | ||||| | || Sbjct 366 TTAGGAAATGCGCATGTTTATAATAATCACATCGATAGTTTAAAAATTCAACTTAATAGA 425 Query 41295 AAACCTAGACCATTTCCAACGCTACTT--ATTAAA-CGCGCTGTTGAAAACATTGATGAT 41351 | ||| ||||| ||||| |||| |||||| | | | || |||| ||||| ||| Sbjct 426 ATACCATATCCATTCCCAAC---ACTTAAATTAAATCCAGATATTAAAAATATTGAAGAT 482 Query 41352 TTT 41354 ||| Sbjct 483 TTT 485 >seq5544 Length=836 Score = 159 bits (176), Expect = 3e-34 Identities = 279/400 (70%), Gaps = 6/400 (2%) Strand=Plus/Plus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 |||||| ||||| ||| | ||| | | ||||| ||||| | || ||||||||||| Sbjct 429 TCCAATATTATATCCTGAAGTTTGGGATTTTTACAAGAAAGCTGAAGCTTCATTTTGGAC 488 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTG-GATTGCATTAAAACCACAA- 43828 |||||||||| ||||||| ||| || ||| | ||| || | | | || |||| Sbjct 489 AGCAGAAGAAATTGATTTATCTAGCGATTTAAAAGATTTTGA--GAAATTGAATGACAAT 546 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || |||||||||||| || || || |||||||| || || || || ||||| Sbjct 547 GAGAAACATTTTATAAAGCATGTGTTAGCATTTTTTGCAGCAAGTGATGGTATAGTATTA 606 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||||||| |||| ||| ||| |||||| || |||||||| | |||||| Sbjct 607 GAGAATTTGGCTAGTAAATTTTTAAGAGAGGTTCAAATAACAGAAGCAAAAAAATTTTAT 666 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 |||||||| || |||||||||||||||| |||| || ||| | | || |||| Sbjct 667 TCTTTTCAAATAGCTGTAGAAAATATTCATTCAGAAACCTATAGTTTATTAATTGATAAT 726 Query 44009 TACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCTGC 44067 || || ||||||| | || ||| | | || ||| |||| ||||||| | ||||| Sbjct 727 TATATTAAAGATGAAAAAGA-AAGATTAAATTTATTTCATGCTATAGAAAATATCCCTGC 785 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107 | ||| |||||||| ||||| |||||||| ||| Sbjct 786 TGTAAAAAATAAAGCATTATGGGCAGCAAAATGGATTAAT 825 >seq1776 Length=1436 Score = 123 bits (136), Expect = 2e-23 Identities = 269/396 (68%), Gaps = 15/396 (4%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||| | |||||||| ||||| |||||||||||||| || ||||| ||||||||| Sbjct 412 CCGAAAATAATTAATGGTCCAGAAATATTAAATAAATATGTTGGACAATCAGAAGAAAAT 353 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAG-GGCGCAAAAGT-- 19545 | || ||| ||| ||||| ||| ||| | |||| || |||| | || | Sbjct 352 ATTCGTAATTTATTTAAAGACGCAGAAATGGAATATAAAC--AAAGTGGCG-AGAATTCA 296 Query 19546 TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---TTCT 19602 | || || || |||||| |||||||| | || || || |||| || ||||| | | Sbjct 295 TTATTACATATAATAATATTAGATGAAATTGATGCTATATGTAGACAGAGAGGAAATGCA 236 Query 19603 GGT----GTA--AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 ||| ||| | ||| ||| |||| | ||| || |||||| | || || ||| | || Sbjct 235 GGTTCAAGTAGTACTGGGGTAAATGATAGTGTAGTAAATCAATTACTATCTAAAATTGAT 176 Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATA 19716 || || || | |||||||| || | ||||| ||||| |||||| | || |||||| Sbjct 175 GGAGTAAATAGTTTAAATAATATCTTGTTAATTGGAATGACAAATAGAATAGATTTAATA 116 Query 19717 GACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGAT 19776 || || || | || || || | || || || | || ||||| |||||| || Sbjct 115 GATGAAGCTTTGCTTCGTCCTGGAAGATTTGAGTTACATATAGAAATATCCTTACCAAAT 56 Query 19777 GAATGTGGACGTGTGGAAATTTTAAACATACATACA 19812 || || | | |||| ||||| || |||||| Sbjct 55 AAAGAAGGGAGAATTCAAATATTAAATATTCATACA 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397331238064780