Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq11001 113 4e-20 >seq11001 Length=546 Score = 113 bits (124), Expect = 4e-20 Identities = 193/279 (69%), Gaps = 1/279 (0%) Strand=Plus/Minus Query 111657 TTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTG 111716 |||||||| ||| |||| || || || ||| |||| || | || |||| | Sbjct 457 TTTAATTTA-AGTGTTGGGAATGGATATGGTATTCTATTAAGTTGAATTTTTAAACTATC 399 Query 111717 TATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAA 111776 |||||||| |||||||||||||| ||||| | || || ||||| ||| | ||| Sbjct 398 GATGTGATTATTATAAACATGCGCATTTCCTAAAACGTGTATAAATTCGGCAGGTTGCAA 339 Query 111777 ACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCAC 111836 | | || ||||||||||| | || | | | ||| |||||| ||||| || || Sbjct 338 ATTACAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTAC 279 Query 111837 ACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACAC 111896 ||||| || | ||| | || |||||||| | |||||||| ||| | | || Sbjct 278 TCCTAGTCCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCGAAAAC 219 Query 111897 ATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 |||||||||||| | | |||||||||||| |||||||| Sbjct 218 ATAAAATTGACATAAAATATGACAAGGAGGTAATGCCAT 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391822567786228