Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5544 170 2e-37 >seq5544 Length=836 Score = 170 bits (188), Expect = 2e-37 Identities = 278/394 (71%), Gaps = 10/394 (3%) Strand=Plus/Minus Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATAT 4780 || |||||||||||| |||||| ||||| || || || ||| ||| | | | ||| Sbjct 827 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTT-TCTAT 769 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| | |||||| || | |||| | |||| ||||||| | || |||| || || Sbjct 768 AGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACT 709 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 ||| |||| ||||| |||||||||| ||| || ||||| ||||| | | ||||| Sbjct 708 ATAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTC 649 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCGTCAC 4959 ||||| |||||| || | ||||| || ||| | || || || ||||||||| |||| Sbjct 648 TGTTATTTGAACCTCTCTTAAAAAT-TTACTAGCCAAATTCTCTAATACTATACCATCAC 590 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAA---GTACTGTTCGTCAGGCTTAAGTT 5016 | ||||||||||| || || ||||| |||||| | || | |||| || | || Sbjct 589 TTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCA---TTCAATT 533 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 | | | | ||||| ||| |||||||| |||||| | |||||||| || |||| Sbjct 532 TCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTT 473 Query 5077 CCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 | ||||| ||||| | | ||||| |||||||| Sbjct 472 CAGCTTTCTTGTAAAAATCCCAAACTTCAGGATA 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426915548596748