Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5544 201 2e-46 seq6281 87.8 2e-12 >seq5544 Length=836 Score = 201 bits (222), Expect = 2e-46 Identities = 257/352 (73%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt--tttttCAT 48396 || || || |||||| ||| || |||||||||||| ||| | || || | |||| | Sbjct 800 GCTTTATTTTTTACAGCAGGGATATTTTCTATAGCATGAAATA--AATTTAATCTTTCTT 743 Query 48397 TGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAA 48456 | |||||||| ||| |||| ||||| | |||||| |||| || ||||||||||| | Sbjct 742 TTTCATCTTTAATATAATTATCAATTAATAAACTATAGGTTTCTGAATGAATATTTTCTA 683 Query 48457 TTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATC 48516 || || ||||| ||||| | | |||||||| || || ||||| | ||||| Sbjct 682 CAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTATTTGAACCTCTCTTAAAAATT 623 Query 48517 GTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTT 48576 |||||||||||| |||||| |||||||| || |||||||||||||| ||||| | Sbjct 622 TACTAGCCAAATTCTCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCT 563 Query 48577 TAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATAT 48636 | ||||||| ||| || ||| | ||| ||| | | || || | ||| | |||| || Sbjct 562 TTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAATCTTTTAAATCGCTAGATAAAT 503 Query 48637 CTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 | | |||||| |||||||||||||| || || ||||| || || | || ||| Sbjct 502 CAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCTTGTAAAAATCCCA 451 >seq6281 Length=778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 47831 TTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTT 47890 ||| | ||| ||||| ||||||||| || | || | |||||||||||| || ||||| Sbjct 512 TTGGGCCATGACTCCTGATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTT 453 Query 47891 GCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttttt 47950 |||| | ||| || ||||| ||| |||||||| || || ||||||| Sbjct 452 TCCTTGAAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGA 393 Query 47951 AAATCCTAA---TTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT 48007 ||||||| |||| ||| | |||||||||||| |||||||||||| ||| | Sbjct 392 GCATCCTAAACATTCT--AATAA-TCTATCTGCAACAAATTCTATATATTGAGACATAAG 336 Query 48008 TTCACAATTCATTCCTAT 48025 | | ||||||| ||||| Sbjct 335 TCTAGAATTCATACCTAT 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694445151379840