Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5544 199 6e-46 >seq5544 Length=836 Score = 199 bits (220), Expect = 6e-46 Identities = 281/393 (72%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 46800 ATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTAT 46859 || || |||||| || ||||| || || || |||||| ||| || ||||||| Sbjct 828 ATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACAGCAGGGATATTTTCTAT 769 Query 46860 AGCATTAAAGAGAAAGtt--tttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 ||||| ||| | || || | |||| | |||||||| ||| |||| ||||| | | Sbjct 768 AGCATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAA 711 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||||| ||||||||||||| ||||| | ||| || ||||| ||||| | ||||| Sbjct 710 CTATAGGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCT 651 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 || || || || |||||| | ||||| || ||||||||| ||||| |||||| Sbjct 650 TCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCA 591 Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA 47097 || || ||||||||||| || ||||| || ||||||| ||| |||| | | ||| ||| Sbjct 590 CTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTC 531 Query 47098 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCT 47157 | | || || | ||| | |||| ||| | |||||| |||||||| ||||| || || Sbjct 530 TCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCA 471 Query 47158 GCTTTTTTATACATATTCCATATATCACGATAT 47190 ||||| || || | || ||| | ||| ||||| Sbjct 470 GCTTTCTTGTAAAAATCCCAAACTTCAGGATAT 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712704870769920