Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq11001 140 4e-28 >seq11001 Length=546 Score = 140 bits (154), Expect = 4e-28 Identities = 287/418 (69%), Gaps = 18/418 (4%) Strand=Plus/Plus Query 50479 ATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TGC 50537 ||||||||||| |||| |||||||||||||||||||| ||||| || | |||| ||| Sbjct 1 ATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAATATGC 60 Query 50538 GACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTTGAAA 50597 | | ||||| ||| | |||| || |||||| | ||||| ||||| | || | Sbjct 61 -ATGATAATTATGAAAATAAAGGTGTTGATCAATT---AAAAAATATAATAAATTTAATT 116 Query 50598 ACAAACC--CCGACGA-TCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGAT 50654 | ||| || || | | | | ||| | || || |||||| || ||| | || Sbjct 117 AAAAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGAC 176 Query 50655 CAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG----CCACAGACAATGT 50710 |||| | |||||||| |||||| |||||||||||||||||| | | || || Sbjct 177 CAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTCGATGGAAAA--- 233 Query 50711 TTTATCCTGT-CAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769 ||||| ||| ||| |||||||| ||| |||| | || |||| || ||||| || Sbjct 234 -TTATCATGTATTATG-TATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTTTTAATA 291 Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAG 50829 | |||||||| || | || || || |||| || |||| | || || |||| | | Sbjct 292 TTGCTTCTTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCCG 351 Query 50830 AATTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAA 50887 ||||||| || |||||| | || ||| |||| ||||| ||||| |||||| Sbjct 352 AATTTATACACGTTTTAGGAAATGCGCATGTTTATAATAATCACATCGATAGTTTAAA 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666860435139360