Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq13 102 2e-16 seq12 87.8 4e-12 >seq13 Length=1110535 Score = 102 bits (112), Expect = 2e-16 Identities = 239/353 (68%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| | | ||||| ||||||||| | | ||||||||||||| | ||||| |||| Sbjct 497457 TTTATAATGCATCCACATCTGAATTATTTGGAAAAGTTCAATGTTCTATTCAAAATGAAA 497516 Query 61144 GGACTCCGTTTTATCCTCGTAGC-CCGTATGGTGTTGCAAAACTATACGCTTACTGGATT 61202 | || || |||||||| ||| | || |||| | | |||||| |||| || | | ||| Sbjct 497517 GTACGCCATTTTATCC-AGTATCACCTTATGCTATAGCAAAATTATATGCACATTATATT 497575 Query 61203 TGTAAAAATTACCGCGAGTCGTATGGAATG-TTTGTATGTAACTCGATTTGTTTCAATCA 61261 | |||||| | || || ||| ||| ||||||| ||| |||| || ||||| Sbjct 497576 ACAATAAATTATAGAGAATCATATAATATGTTTTGTAT-TAATGGCATTTTATTTAATCA 497634 Query 61262 CGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAA 61321 || ||||| | ||||| | ||||| || | |||||||| | | ||||||| Sbjct 497635 TGAAAGTCCAAGAAGAGGAGAAACTTTTGTTACCAGAAAAATTACTAGAGGTATTGCAAA 497694 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTATC-TAGGAAACATAGACTCTAAAAGAGATT 61380 ||| || | ||| || ||| |||| |||| || ||||| | | ||||||| Sbjct 497695 AATTCAAAAAAAATTACAAACATCCAT-TATCTTAGGTAATATAGATACATATAGAGATT 497753 Query 61381 GGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGAT 61433 |||| |||| | |||||| | ||||||| | ||||| |||||| || Sbjct 497754 GGGGTCATGCAAAGGATTATGCATATGCTATGTATCTTATGTTACAACAAAAT 497806 >seq12 Length=1108057 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 212765 TAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 212820 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 213947 TGCCTCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAG 213888 Query 165769 CCCC 165772 ||| Sbjct 213887 TCCC 213884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057812710042790