Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 149 6e-31 >seq6 Length=2947581 Score = 149 bits (164), Expect = 6e-31 Identities = 577/884 (65%), Gaps = 37/884 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| ||||| || | ||| ||||| ||||| |||||||| | | || || | Sbjct 127791 TTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAGT 127850 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAG---TTCCGTA 16027 |||| ||| || ||||| | | || ||| || |||||| | || | ||| || Sbjct 127851 CCATCCAATTGAATGGATTTTTTGAATGGAAA-ATTTTAGAGCATCCTAAACATTC--TA 127907 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AATTAATTCCTAT 16086 | |||||||||||| |||||||||||||||||| |||| ||||| |||| || ||||| Sbjct 127908 A-TAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTAT 127965 Query 16087 -AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA 16145 || || | | || | || || ||| | ||| | | || |||||||||| Sbjct 127966 TAAATCACATGGTAAT-GATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAA 128024 Query 16146 TGATATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 |||| || | | | ||| | || ||| | || || | |||| || Sbjct 128025 CAATATTT-TGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAA 128083 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || |||||||||||| ||||| || || | ||| || ||| ||||| || Sbjct 128084 TTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAACCA 128143 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATG--ACCCCGAAAAGAATA 16322 | | ||| | |||| || ||||| || || ||| |||| | ||| | || |||| Sbjct 128144 TGTAATTTATTTTGTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCAC-TGAATAATA 128201 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG---TAGCATCTTTATTAC 16379 | || |||||| ||||| ||| | || | ||| || | | ||| ||| || Sbjct 128202 TTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAATTAGTATCATT----- 128256 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 ||||||||| | ||||| ||||| | ||||| | || ||||||| || | Sbjct 128257 -AATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTATAGCAT 128315 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 ||| || || | |||| | ||| | ||||| ||||||| | |||||| || Sbjct 128316 GAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATG 128375 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 ||||||| || || || |||| ||||| ||||| ||| || | || || | || Sbjct 128376 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 128435 Query 16560 TTTGTACTTCCACGTAAAATCGTTC-CGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 |||| || | | | ||||| | | |||| ||||| || ||||| |||||||| Sbjct 128436 TTTGAACCT-CTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCT 128494 Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA--GAATATGCC 16676 |||||||| || || | ||||| || |||| ||| || | ||| | ||| | | Sbjct 128495 GCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT----TGTCATTCAATTTCTC 128550 Query 16677 --AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||||||||||||| | |||| ||| | |||||||| |||||||| ||| | || Sbjct 128551 AAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGC 128610 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 || || || | | ||||| ||| ||| ||| ||| ||| Sbjct 128611 TTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGATATA 128654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409074897560