Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq9 208 6e-49 >seq9 Length=776283 Score = 208 bits (230), Expect = 6e-49 Identities = 434/640 (68%), Gaps = 16/640 (3%) Strand=Plus/Minus Query 101633 AATCTAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATG 101692 ||| |||||||||| || || || ||| | | || ||||| | | ||| ||| Sbjct 512147 AATTTAAGTGTTGGGAATGGATATGGTATTCTATTAAGTTGAATTTTTAAACTATCGATG 512088 Query 101693 TGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTA 101752 |||| ||| | || |||| ||||| | || ||||| || |||| | |||| Sbjct 512087 TGATTATTATAAACATGCGCATTTCCTAAAACGTGTATAAATTCGGCAGGTTGCAAATTA 512028 Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 ||| || |||||||| ||| |||| |||||| |||||| ||||| || |||||| Sbjct 512027 CAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACTCCT 511968 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | || | |||| ||| |||||||||| ||| || | |||||||| | |||||| Sbjct 511967 AGTCCTAAATCACATGACCTTTGATACATAATACATGATAATTTTCCATCGAAAACATAA 511908 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAA 101932 ||||||| ||| | ||||||||| || || |||||| || ||| |||||||| Sbjct 511907 AATTGACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACATTCCAT 511848 Query 101933 GCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTT 101992 ||||||| | || |||||| |||||| | |||| || || || | | |||| Sbjct 511847 GCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTATATTTTTT 511788 Query 101993 AATTGGTCAACTCCT---TCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCG 102049 ||||| ||||| ||| | | | | || ||| || | | | ||||||| |||||| Sbjct 511787 AATTGATCAACACCTTTATTTTCATAATTATCATGC---ATATTTGTATATTCAGCTCCG 511731 Query 102050 AAATGCCTCCACTGAAATCCATACACAGGTCCAAGATC---TCCTTCATCTCTGTCATAA 102106 ||||| ||||| ||||| ||||| | |||||| | ||| |||| ||| || |||| Sbjct 511730 AAATGTCTCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTC-TCTATGAAATAA 511672 Query 102107 AAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT--GTGCACGCCAG 102164 | | |||||||||||| |||| ||||| || ||||| || | || | Sbjct 511671 TTTTCTA--TTATCTAAAAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTCTTA 511614 Query 102165 CTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAA 102224 | | | ||| || | | || |||||| |||||||| | || |||||||| || Sbjct 511613 TT--TAACAGCGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATAA 511556 Query 102225 CACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 ||||| | |||| | |||| |||||||| | ||| || Sbjct 511555 TTCCTCTTAAGAATAATTTCTTTGTAGTTAATAATGGGAA 511516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361247532510083