Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 381 7e-101 >seq6 Length=2947581 Score = 381 bits (422), Expect = 7e-101 Identities = 1113/1699 (66%), Gaps = 40/1699 (2%) Strand=Plus/Plus Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 53009 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATAGA 53064 || | ||||| || ||||| |||| || ||||| | | || ||| |||| | Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAACACT 1353510 Query 53065 TCCACCATCTACCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 53123 |||| | | || ||| | | || || || |||| |||||| ||| || || Sbjct 1353511 TCCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATA 1353569 Query 53124 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183 || || | | | ||| |||||||| || |||||||||| || ||||| | | | Sbjct 1353570 AATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAAT 1353629 Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243 |||||||||| ||||| ||||| | || ||||||||||| | |||||| | ||| |||| Sbjct 1353630 AAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATG 1353689 Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 53303 |||| ||||||||||| | ||||| ||||| | ||| | | | |||||| ||| Sbjct 1353690 CAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTT 1353749 Query 53304 TTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTTG 53358 ||| ||||||| |||| | | || | | | ||| Sbjct 1353750 TTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATTG 1353807 Query 53359 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 53417 || || || | || || | || |||| ||| | || |||||||| | | || Sbjct 1353808 TAATATTCCTTGGCTAGCTGGAC-TTCCTTGATAGGATTCATATGGTCCATGTATAGAAG 1353866 Query 53418 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 53477 | | |||| | | ||||| ||| | || || || ||||| || || | ||||| | Sbjct 1353867 CCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCA 1353926 Query 53478 GATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 53535 |||| ||| | ||| ||| ||||||| |||| | ||||| | |||||||| Sbjct 1353927 ATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTAA 1353984 Query 53536 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 53595 |||||| ||||||||||| |||||||| ||||| |||| || ||| || ||| | Sbjct 1353985 TCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGAC 1354044 Query 53596 AGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATC 53655 || |||||||| | ||||||||||||| | |||||| ||| | ||| | || Sbjct 1354045 TGGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTC 1354104 Query 53656 CTTCAGTTTGAGAAAATCAAATTGTCCATCT-----AT-TACAAACATGTTCAATGCAAT 53709 | | || ||||| ||||| | | | || |||||| | || || || Sbjct 1354105 ATATAACTTTTTAAAATTAAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTAT 1354164 Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 |||||||| |||||| || || || |||| || | ||||| ||| || ||| || Sbjct 1354165 AGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACA 1354224 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 | |||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 1354225 TAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAATC 1354284 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||||| | || |||| ||| ||||| || ||| || || || || ||| | Sbjct 1354285 TTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAA 1354344 Query 53890 GACACGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAA 53946 | |||| | | | ||| | || | |||||| ||| ||| ||||| || Sbjct 1354345 ATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAA 1354401 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 | |||||| || || ||||| | || || |||||||||| |||||||| | Sbjct 1354402 TTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAG 1354461 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1354462 GGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATA 1354521 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 ||||| ||||| | ||| ||| || ||||| ||| || | | ||| | || | Sbjct 1354522 AAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAATTC 1354581 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | ||||| |||||||| ||||| | || | | | | ||| ||||| ||| Sbjct 1354582 AAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCTCC 1354641 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 || ||||||| ||||| || |||| |||| ||||||| ||||| || | | |||||| Sbjct 1354642 ACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCATT 1354701 Query 54247 GGATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACT--AATTGA 54303 ||| |||||||| || |||| || | | | | ||| || | || Sbjct 1354702 AGATATTCCATTGGTACCTCTAATATAAGAAT---TTTGTCCTCTTATGTCTTGTACTGC 1354758 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || ||| || || ||||| ||||| ||||| || ||| |||||| || ||| | || Sbjct 1354759 TACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAAAT 1354818 Query 54364 GCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 || || ||| ||| | |||| | ||| || ||||| ||||||||| | | Sbjct 1354819 ACCTTCAATAGAATCTGCTTTCATCGATAA-TAAGAAACAAGAAGACATTTGTGGTCTGG 1354877 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 || || | ||||||||| ||||||| || || || || |||| | ||| | || || Sbjct 1354878 GCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAAAT 1354937 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 || || || | |||| |||||||| | ||| || || | | || | ||||| Sbjct 1354938 GATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCATTA 1354997 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 | | || ||||||||||||| || || || || || | || || ||| |||||| Sbjct 1354998 ATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCA 1355057 Query 54603 AAGTTTTAAAACCAAAATA 54621 | |||||||| |||||||| Sbjct 1355058 AGGTTTTAAATCCAAAATA 1355076 Score = 168 bits (186), Expect = 8e-37 Identities = 281/401 (70%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 |||| ||||| ||| ||||| || || |||||||| ||| || | |||||| Sbjct 128252 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTATA 128311 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 |||| ||| | || | |||| || |||||||| ||| ||||||| || | |||| Sbjct 128312 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 128371 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 || |||| |||||||| ||||| | || |||||||| || || | | || || Sbjct 128372 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 128431 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACT 24544 || || || || ||| | ||||| | || || ||||| || ||||| || ||||| Sbjct 128432 GTTATTTGAACCTCTCTTAAAAATT-TACTAGCCAAATTCTCTAATACTATACCATCACT 128490 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 24603 ||||||||||| || || ||||| |||||||||| ||| || | || || | ||| | Sbjct 128491 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCATTCAATTTCT 128549 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || | Sbjct 128550 CAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAG 128609 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704 | || || || | || ||| | ||| ||||| |||||| Sbjct 128610 CTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 128650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715417873840