Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq9 221 8e-53 >seq9 Length=776283 Score = 221 bits (244), Expect = 8e-53 Identities = 453/669 (68%), Gaps = 6/669 (1%) Strand=Plus/Minus Query 96965 TAAAATCATCAATAGATGCAATCTTTCTGGCA--AACTTTAGTGTTGGGAAAGGCCTGGG 97022 ||||||| |||||| | ||| | |||| || || ||||||||||| || || Sbjct 512179 TAAAATCTTCAATATTTTTAATAT--CTGGATTTAATTTAAGTGTTGGGAATGGATATGG 512122 Query 97023 AGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCC 97082 ||| |||| || | | | | ||| |||||||| ||||| || |||| ||| Sbjct 512121 TATTCTATTAAGTTGAATTTTTAAACTATCGATGTGATTATTATAAACATGCGCATTTCC 512062 Query 97083 TAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAA 97142 |||| ||| |||||||| |||| |||| | ||| || || |||||| ||| || Sbjct 512061 TAAAACGTGTATAAATTCGGCAGGTTGCAAATTACAGACTTGTGCAATCATATGAGTAAA 512002 Query 97143 TAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATA 97202 | |||||| |||||| |||||||| || |||||||| | |||| ||| |||||||| Sbjct 512001 AATAGAATAAGAAGCAATATTAAAAGGTACTCCTAGTCCTAAATCACATGACCTTTGATA 511942 Query 97203 TAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGG 97262 | ||| || | |||||||| | |||||||| |||| || | |||||| || || Sbjct 511941 CATAATACATGATAATTTTCCATCGAAAACATAAAATTGACATAAAATATGACAAGGAGG 511882 Query 97263 CAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGT 97322 || ||||||| || |||| |||||||| ||||||| | ||||||||| || Sbjct 511881 TAATGCCATTTGGTCAAGATCTTTTACATTCCATGCACACAAAAGAATTCTTCTACTTGT 511822 Query 97323 TGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATA 97382 || | | | || ||| ||||| | |||||||||||||| |||| |||| Sbjct 511821 AGGATCATTTTTAATTAAATTTATTATATTTTTTAATTGATCAACACCTTTATTTTCATA 511762 Query 97383 ATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGG 97442 ||| | | | | | |||||| ||||| ||||| |||||||| || ||||||| ||| Sbjct 511761 ATTATCATGCATATTTGTATATTCAGCTCCGAAATGTCTCCATTGAAAACCATAAATAGG 511702 Query 97443 TCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCC 97502 ||| | || ||||||||| | | || ||||||||| | ||||| || Sbjct 511701 TCCTAAATCGTTAACTTCTCTATGAAATAATTTTCTATTATCTAAAAATTCCCTAGTACC 511642 Query 97503 ATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTC 97561 ||| || ||||| || ||| | || | ||| || | | || ||||| Sbjct 511641 ATTAGCTTCCCATATCCTTACATTCTTAT-TTAACAGCGTATTACCATTTGTTTCTCCTC 511583 Query 97562 TGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGA 97621 | |||||||| | ||||||||| | || ||||| | |||| | |||| || ||||| | Sbjct 511582 TAATAAACCAAAGCAATTCTTCAATAATTCCTCTTAAGAATAATTTCTTTGTAGTTAATA 511523 Query 97622 GAGGAAAAT 97630 || |||| Sbjct 511522 ATGGGAAAT 511514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346780479383810