Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9 250 4e-61 seq169 187 4e-42 seq5 172 8e-38 seq10 118 2e-21 >seq9 Length=776283 Score = 250 bits (276), Expect = 4e-61 Identities = 520/767 (68%), Gaps = 13/767 (2%) Strand=Plus/Minus Query 205321 TTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTA 205380 |||| ||| | | |||| ||||| | |||| | | | | ||| ||||||| | || Sbjct 512150 TTTAATTTAAGTGTTGGGAATGGATATGGTATTCTATTAAGTTGAATTTTTAAACTATCG 512091 Query 205381 ATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAA 205440 || |||||| ||| | ||| ||||| || | | || |||||||| |||| ||| Sbjct 512090 ATGTGATTATTATAAACATGCGCATTTCCTAAAACGTGTATAAATTCGGCAGGTTGCAAA 512031 Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 ||| | ||||||||||||| ||| || | | |||| ||||| |||||| ||||| Sbjct 512030 TTACAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACT 511971 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 |||| || | |||| ||| ||||||||||| ||||| | |||| || | Sbjct 511970 CCTAGTCCTAAATCACATGACCTTTGATACATAATACATGATA---ATTTTCCATCGAAA 511914 Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 |||| |||||| ||| || | ||||||||| |||| |||| | |||| |||| | Sbjct 511913 ACATAAAATTG-ACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTAC 511855 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 |||||| || || | || ||||| | ||| | |||||| ||| |||||| || Sbjct 511854 ATTCCATGCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTAT 511795 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGC 205739 || | |||||||||||| |||| |||| |||||| || ||||| |||||| ||| Sbjct 511794 ATTTTTTAATTGATCAACACCTTTATTTTCATAATTATCATGCATATTTGTATATTCAGC 511735 Query 205740 ACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATT 205799 || ||||| | ||||||||||||||||| || |||||||| ||| ||||| | Sbjct 511734 TCCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTATGAAA 511675 Query 205800 AAAACCACGtttttttatatattttaatgatccattttcatcccaaat--atggattcct 205857 || | || | || | ||| | ||||| | ||||| || | |||| Sbjct 511674 TAATTTTCTATTATCTAAAAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTC-- 511617 Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACA 205917 |||||| || |||| ||| ||| ||| |||||||| | |||||||||| | Sbjct 511616 TTATTTAACAGCGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATA 511557 Query 205918 ATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATAT 205977 |||||||| | || | | ||||| || |||||||| || | | | ||| | | || Sbjct 511556 ATTCCTCTTAAGAATAATTTCTTTGTAGTTAATAATGGGAAATATTGACTTAAATCAAAT 511497 Query 205978 TTCATAGTTAAACCATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTC 206035 |||||| | | || || | || | |||| ||||||| || |||| |||| Sbjct 511496 TTCATAATATATCCGAATTTACTTAAAACACCTACTCCTGTTCGATCACTTTGTTTAT-- 511439 Query 206036 TTCCATTAGATAATATTTCTGATATACCTTTTAAATATTGATATTCA 206082 ||||||| || || || ||||| |||||||||||||||||| Sbjct 511438 TTCCATTCATTATAATATCATATATAATATTTAAATATTGATATTCA 511392 >seq169 Length=6603 Score = 187 bits (206), Expect = 4e-42 Identities = 184/235 (78%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| ||||||| ||||| || ||| | || ||||| || | Sbjct 5551 ATGCAAATTTTTGTTAAAACATTAACAGGAAAAACCATTACTCTCGATGTTGAACCATCT 5492 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| ||||| || |||||||||||||||||||| || |||||||| || Sbjct 5491 GACACCATTGAGAATGTTAAAGCA-AAAATTCAAGATAAAGAAGGAATTCCACCTGACCA 5433 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||||||||||| | |||| || |||||| || Sbjct 5432 ACAAAGATTAATATTTGCCGGAAAACAATTAGAGGACGGAAGAACTCTATCAGATTACAA 5373 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 ||||||||||||||| || || || || || ||| | ||| |||||||| || || Sbjct 5372 TATTCAAAAAGAATCCACCTTACACTTAGTGTTAAGATTAAGAGGTGGTTTTTAA 5318 Score = 149 bits (164), Expect = 9e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124565 AGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAA 124624 ||| ||||||||||| | || | || || ||| || ||| ||| |||| || Sbjct 5753 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACTATTGAGAATGTAAAGGCAAA 5694 Query 124625 AATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACA 124684 |||||||||||||||||| || |||||||| |||||||| | || ||||| |||||||| Sbjct 5693 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCTGGAAAACA 5634 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTT 124744 |||||| ||| | |||||||| ||| || || |||||||| ||||| || || || || Sbjct 5633 ATTAGAAGATGGAAGAACATTATCAGACTACAACATTCAAAAGGAATCTACATTACACTT 5574 Query 124745 GGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||| | || |||||||||| ||| || Sbjct 5573 AGTGTTAAGACTAAGAGGTGGTATGCAAATTT 5542 >seq5 Length=2479031 Score = 172 bits (190), Expect = 8e-38 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||| |||| || ||||| || || | || |||| || Sbjct 2307825 AATGCAAATTTTTGTTAAAACATTAACTGGAAAAACAATTACCCTTGATGTTGAGCCATC 2307766 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || |||||||||||||||||||| || ||||||||||| Sbjct 2307765 TGATACGATTGAGAATGTGAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTGATCA 2307706 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| |||||||||||||| ||| | |||||||| ||||||||| Sbjct 2307705 ACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCAGATTATAA 2307646 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||| ||||| || || || ||||| Sbjct 2307645 TATTCAAAAGGAATCTACATTACACTTGGT 2307616 Score = 91.5 bits (100), Expect = 2e-13 Identities = 608/936 (65%), Gaps = 129/936 (14%) Strand=Plus/Plus Query 228173 ataatttaacaaaatcgttaat-taaattaaatattagtaattgtaatataataaatgct 228231 ||||||||| |||| |||| |||| |||||| || ||| | ||||| |||| || | Sbjct 1018080 ATAATTTAATTAAAT---TAATATAAAATAAATAATATTAAATATAATAAAATATATTTT 1018136 Query 228232 agttctttaa--------aaaatttaattaatttaaaagaattggatatatctaacaatt 228283 | ||||| || | ||||||||||| |||| | || ||| || || | | Sbjct 1018137 AATTCTTAAATTAATATTACAATTTAATTAAATTAATATTATAAAATAAAT--AATATTA 1018194 Query 228284 ataatataaatatttCATCATTACCaaa--aacatta----attaaattaaatatt-agt 228336 ||||| |||||| | | ||| ||| || |||| ||| ||||||||| | Sbjct 1018195 TTAATA-AAATATATTTTTATTTTAAAATTAATATTATATAATTTAATTAAATAAACAAA 1018253 Query 228337 tcatgtaatataaaaaa-tactaattttataattaatttagataatttGAAAGAATTAGA 228395 | || ||| ||||||| || ||||| ||| ||| ||| |||| ||| ||||| | Sbjct 1018254 TAATATAAAATAAAAATGTATTAATTAAATA-TTA--TTATTTAATACCAAATAATTA-A 1018309 Query 228396 TATATCTAGAAATTTTAATATAAATATTTCATCATTACCAAAATCATTAATCAAATTAAA 228455 ||||| |||| || ||||| | || | |||||| |||| ||||| | Sbjct 1018310 TATAT----------TAAT-TAGTTATTTAAA-ATAAACAAAATATATAATTTAATTATA 1018357 Query 228456 TATTAGGACATGTTATATAAAAAATACTAATTTTATAATTAATTTAGATAATTTGAAAGA 228515 | ||| ||| ||||| |||| ||||||||||||| || |||| || || Sbjct 1018358 TTTTA-------TTA-ATAAATAATA----TTTTATAATTAATATA-ATAAATT--AATT 1018402 Query 228516 ATT-----AGATATATCTAG-AAATTTTAATAT--AAATATTTCATCATT--ACCAAAAT 228565 ||| | |||||| ||| |||| || ||| || || | | ||| | ||||| Sbjct 1018403 ATTATAAAAAATATAT-TAGTAAATAATATTATTAAATTAATACTAAATTAAATAAAAAT 1018461 Query 228566 CATTGATTACATTAAATATTAATTCATGTTATATAAAACACACTAATTTTATAAATGATT 228625 || || | | ||| |||| || | ||||||||| | || | || || | ||||| Sbjct 1018462 AATCAATAAAA--AAAAATTATTTATTAATATATAAAATAAAC--AATTAATTACTGATT 1018517 Query 228626 TATATAATTTGAAGGAATTGGATATATCTAGAAATTATAATATAAAT----ATTTCATCA 228681 || |||||| |||| |||||| || ||| |||||| ||||| ||| || | Sbjct 1018518 TAAATAATT-----AAATTAAATATATATATAAA-TATAAT-TAAATTTAAATTGAATAA 1018570 Query 228682 TTACCAAAATCATTAATCAAATTAAATATTAGTGATTGCGATATTAAAAATACTAATTTT 228741 || ||| || || |||||||| ||| ||| | |||| | | ||||| | Sbjct 1018571 ATAAATTAATTATATATATAATTAAAT-TTA--AATT----AAATAAATAAATTAATTAT 1018623 Query 228742 ATAAAT-GATTTAGATAATTTGAAAGAATTAGATATATCTAACAATTATA-ATATAAATA 228799 ||| || || || ||| || | ||||| ||| || | || |||| |||||||| Sbjct 1018624 ATATATAAATATAATTAAATTTA---AATTAAATAAATAAATTAAGTATATATATAAAT- 1018679 Query 228800 TTTCATCATTACCAAAAACATTGACTACATTAAATATTAGTTCATGTAATATAAA-AAAT 228858 || |||| | | ||| | || |||| |||| || | |||||||| |||| Sbjct 1018680 ----ATAATTAAATATTAAATTAAATAAATTA---ATTAATTATTTAAATATAAATAAAT 1018732 Query 228859 ACtaatttta--taattaatt-----tagataatttga-aagaattagata---tatcta 228907 | ||| || | |||||||| || |||||| || | || || ||| || || Sbjct 1018733 ATTAAATTAAATAAATTAATTATGTATATATAATTAGATATTAAATAAATAAATTAATTA 1018792 Query 228908 aaaattttaatataaat--atttCA---TCATTACCAAAATCATTGATTACATTAAATAT 228962 | |||| ||||||||| || | | | |||| |||| | | ||| ||||||| Sbjct 1018793 ATTATTTAAATATAAATAAATATTAAATTAATTAAATAAATAAATTATTTATTTAAATA- 1018851 Query 228963 TAATTCATGTTAT---ATA--AACCATACTAATTTTATAAATGATTTATATAATTTGAAA 229017 ||||| || |||| ||| || | | ||| | ||| ||| | |||||||| | | Sbjct 1018852 TAATTAATATTATTAAATAATAATTAAAATAAATATATTAATTAATTATATAA----ATA 1018907 Query 229018 GAATTAGATATATCTAACAATTA-TAATATAAATAT 229052 ||||| |||||| || ||| | ||| |||||||| Sbjct 1018908 TAATTA-ATATATTAAATAATAATTAAAATAAATAT 1018942 >seq10 Length=1171446 Score = 118 bits (130), Expect = 2e-21 Identities = 310/473 (66%), Gaps = 10/473 (2%) Strand=Plus/Plus Query 202738 ATATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATA 202797 |||||||| || | | |||| |||||| | | |||| | | |||| ||||||| Sbjct 488891 ATATTTTTGCATGTAATAGTCAATATCAAAATGTCTCTTACAACTATTATAATTCATATA 488950 Query 202798 TCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGA 202857 ||||||||| || ||||| || ||| ||||| | |||||| || | |||||| Sbjct 488951 TCTAATTTTTCCGAATATATTTCGTTCATTCCAACTTTGATCATGTATTGCCATAATTGA 489010 Query 202858 CCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAA 202917 |||| | ||||||||||| |||| | |||| ||| | | | ||||||||| Sbjct 489011 GGACATGATTGAAACATATCCATATGGACTTTTTGCATCAATAGCAAAATCATCATTTAA 489070 Query 202918 ATNNNNNNNNNNNNNNAATGCT-TCTTCTGGTGATTT---TGTCCATTCTAATAtttttt 202973 | || ||| | ||| || || || ||| | | |||| || Sbjct 489071 TTTCATGGCATATTTTAAAGCTGTTTTC----GAATTGCCTGACCAGTTCAGAATTTGTT 489126 Query 202974 tAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTG 203033 | |||||||||||| ||| || |||| ||| |||| | |||| | ||| ||| | Sbjct 489127 TGCACCAATACATTCTCAAAAATTCATGAATTATACCTTCATTAATTAATTGCAATTGAG 489186 Query 203034 ATGCATTCCATAAATTGTCATGAGTTAATGCA-TTTTCAAGTTGATATAAACTATATATA 203092 ||||||||||| ||||| || ||| |||| |||| |||| | ||||| | Sbjct 489187 CACAATTCCATAAATCTTCATGTGTCTTAGCATTTTTGAAGTCTTCATAATC-ATATAAA 489245 Query 203093 TGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCA 203152 | || ||| |||| | |||| |||| | | | ||||||| | || | ||| Sbjct 489246 TATTCTCTTTTATCTGCATCGTGTTTTTTTAAAGAATCTTTTGCCCAGTCTTTTCCTCCA 489305 Query 203153 TTTATATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTT 203205 || | ||| || ||||||| ||| |||||||| ||||| ||| ||| ||||| Sbjct 489306 TTAAAATTGTCATAATTTTTATTGTAATAACAGAAATTGTCAGCTAGCTCTTT 489358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755448133814400