Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq169 93.3 5e-14 seq12 84.2 3e-11 >seq169 Length=6603 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | ||||| || || || ||| || ||||||||||||||||| | Sbjct 5325 CCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGAT 5384 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| |||| || || || || ||||| | || || ||||| | || Sbjct 5385 AGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGA 5444 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||| | ||| |||||| ||| | || | | ||||| | ||| || Sbjct 5445 ATTC-CTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAAC 5503 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || |||||||| || |||| || || ||||| |||||||| Sbjct 5504 ATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 >seq12 Length=1108057 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | | |||||| |||||| ||||| |||||||||||||||| |||| Sbjct 447200 AAAAAAAATCTCCGAGACCGGGAATTGAACCCGGGTCTTCCGCGTGACAGGCGGAAATAC 447141 Query 60117 TCACCACTATACTACCGAGGATTGAATATATAAC 60150 | ||||||||||| | ||||| || || |||| Sbjct 447140 TTGCCACTATACTATCTCGGATTCAAAATTTAAC 447107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811645949240