Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5 156 6e-33 seq169 143 4e-29 >seq5 Length=2479031 Score = 156 bits (172), Expect = 6e-33 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCAT 146126 |||||| ||||| |||||||| ||| || |||||||||||||| | ||||| | ||| | Sbjct 2307615 TACCAAGTGTAATGTAGATTCCTTTTGA-ATATTATAATCTGATAATGTTCTTCCATCTT 2307673 Query 146127 CTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTT 146186 ||||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||| Sbjct 2307674 CTAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTT 2307733 Query 146187 GNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTT 146246 | ||||| || || || || || || ||||||| Sbjct 2307734 GAATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTT 2307793 Query 146247 TACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAAAATA 146292 | || ||||||||||||| || ||||||||||| ||| || |||| Sbjct 2307794 TTCCAGTTAATGTTTTAACAAAAATTTGCATTTTCTTAAAATAATA 2307839 >seq169 Length=6603 Score = 143 bits (158), Expect = 4e-29 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| || || ||||| || |||||||| ||||| |||||||| Sbjct 5325 CCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGAT 5384 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || |||||||||||||| ||||| || |||||||| || || || ||| Sbjct 5385 AGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGA 5444 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| || || || ||| || Sbjct 5445 ATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACA 5504 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || ||||| |||||||||||||||| || |||||||| Sbjct 5505 TCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 138 bits (152), Expect = 2e-27 Identities = 115/138 (83%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| |||||||| || || ||||| |||||||| ||| || || || || ||||| Sbjct 5553 CCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGA-ATGTTGTAGTCTGA 5611 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| |||||||||||||||||||| || |||||||| || || || || Sbjct 5612 TAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGG 5671 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||||||||| Sbjct 5672 AATTCCTTCTTTATCTTG 5689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743518658031360