Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq6 233 2e-56 >seq6 Length=2947581 Score = 233 bits (258), Expect = 2e-56 Identities = 570/846 (67%), Gaps = 27/846 (3%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||| || || || || || || || ||||||||||||| | |||||| Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAA 16059 ||||| ||| || |||||||||||| | |||| |||||| || ||| || Sbjct 127849 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 127908 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC-ACAGTTCATTCCTA 16118 ||||||||| || |||||||||||||| || ||| || || | | ||||| |||| Sbjct 127909 ---TAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTA 127964 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 |||| | | || | || ||| || |||| | |||| | | || ||||| | | Sbjct 127965 TTAAATCACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAA 128024 Query 16179 TTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAA----ACATTATA 16234 |||| | ||| | | | | ||| | |||| || | | || | |||| Sbjct 128025 CAATATTTTGTACCA---TTTGTTCTGGAAG-TTTATTATCTAATAAACTATAAATTAAG 128080 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||| |||||| ||| | |||||| || ||||||||||| || || |||||| | | Sbjct 128081 CAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAA 128140 Query 16295 CC-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || || ||| | | ||||||||| |||||| ||||| ||| |||| || || Sbjct 128141 CCATGTAATTTATTTT-GTTTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAA 128199 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 ||| |||||||| ||| || || | | ||| | | | || | | | | Sbjct 128200 TATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAATTAGTATCATTA-- 128257 Query 16414 tatccattttttagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCAT 16472 ||||||||| ||||| |||||| | ||| || ||| || || ||||| |||| Sbjct 128258 -ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGG-ATATTTTCTATAGCAT 128315 Query 16473 TAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 |||||||| | ||||||| |||| ||||||| |||| |||| ||||||||| Sbjct 128316 GAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATG 128375 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||||||||||||||| || | ||||| |||||| |||||| | | ||||| | || Sbjct 128376 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 128435 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651 |||| || || ||||| || || || || || || ||||| ||||| || ||| Sbjct 128436 TTTGAACCTC-TCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCT 128494 Query 16652 GCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTTTAACCA 16710 |||||||| || | | || || ||||||| ||| || || || | || || | | | Sbjct 128495 GCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCA-AA 128553 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770 || ||||| | |||||||| | |||||| | |||||||| ||||| |||| || Sbjct 128554 ATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTT 128613 Query 16771 TTTATA 16776 || || Sbjct 128614 CTTGTA 128619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507184093800