Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq9 230 2e-55 >seq9 Length=776283 Score = 230 bits (254), Expect = 2e-55 Identities = 503/743 (68%), Gaps = 13/743 (2%) Strand=Plus/Plus Query 20043 ATTTCCC-TTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTAT 20101 ||||||| ||||||||||| || |||| | | ||| || ||||||| || | | Sbjct 511514 ATTTCCCATTATTAACTACAAAGAAATTATTCTTAAGAGGAATTATTGAAGAATTGCTTT 511573 Query 20102 GGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAG-ATTTGG 20160 ||||||||| |||| ||||||| || ||| || || ||| | |||| || ||| Sbjct 511574 GGTTTATTAGAGGAGAAACAAATGGTAATACGCTGTTA-AATAAGAATGTAAGGATATGG 511632 Query 20161 AGCGCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAG 20217 || |||| ||| | |||||||| | | | || |||| | | | ||| Sbjct 511633 GAAGCTAATGGTACTAGGGAATTTTTAGATAATAGAAAATTATTTCATA---GAGAAGTT 511689 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 ||||| || ||| | ||||| ||||||||||||||||| |||||||||||| | Sbjct 511690 AACGATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGAGCTGAATATACAAAT 511749 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | |||||| |||| || ||||||||| ||||| | || ||||||||| Sbjct 511750 ATGCATGATAATTATGAAAATAAAGGTGTTGATCAATTAAAAAATATAATAAATTTAATT 511809 Query 20338 -AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCC 20396 |||| || || | | | ||||||||| |||| || || ||||| | |||||| | Sbjct 511810 AAAAATGATCCTACAAG-TAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGA 511868 Query 20397 TTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATT 20456 |||||| || ||||| |||||||| |||| |||||||| ||| || |||| Sbjct 511869 CCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTCGATGGAAAATT 511928 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 || ||| ||||||||| | || |||| | ||||| || || ||||| |||||||| Sbjct 511929 ATCATGTATTATGTATCAAAGGTCATGTGATTTAGGACTAGGAGTACCTTTTAATATTGC 511988 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTT 20576 |||| | | |||| ||||||||||||| || |||| || | | || || Sbjct 511989 TTCTTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCCGAATT 512048 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGA-ACCTTTAAAATTAC 20635 | ||| ||||| | |||||| |||| |||||| || || | || |||||| Sbjct 512049 TATACACGTTTTAGGAAATGCGCATGTTTATAATAATCACATCGATAGTTTAAAAATTCA 512108 Query 20636 AGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATA 20695 | |||| | || |||| | | ||||||||| ||| | | || | | ||||| ||| Sbjct 512109 ACTTAATA-GAATACCATATCCATTCCCAACACTTAAATTAAATCCAGATATTAAAAATA 512167 Query 20696 TTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTC 20755 || | ||||||| | | |||||| || || |||| || ||| | |||| Sbjct 512168 TTGAAGATTTTACAATTTCGGATTTTACAATACAAAATTATGTTCATCATGAAAAAATTT 512227 Query 20756 CAATGGAAATGTCTGTTTAATAT 20778 ||||||| ||| ||| |||||| Sbjct 512228 CAATGGATATGGCTGCCTAATAT 512250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399179947409185