Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq6 221 1e-52 >seq6 Length=2947581 Score = 221 bits (244), Expect = 1e-52 Identities = 590/883 (67%), Gaps = 39/883 (4%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||||||||| || || ||||| || || ||||| ||||| |||| ||||| || Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAA 14028 ||||| ||| ||||||||| |||| || | |||| || |||| |||||| Sbjct 127849 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 127908 Query 14029 TAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTA 14087 || ||||||| |||| || || |||||||||||||| || || | |||||||||||| Sbjct 127909 TA---ATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTA 127964 Query 14088 TTAGTTTTACAGG--AATTATATTGGT-TAAAAATTCTTT----TTCTATAGACACAGCC 14140 ||| | ||| | ||| || | ||||| ||||| ||||| |||| Sbjct 127965 TTAAATC-ACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTA------CAGCT 128017 Query 14141 TCGTTTATAATAATCGTAATAATTTCAT-TAGAAGGAGGATATTTTAGATGTTTAAAAAT 14199 || || | |||| | | |||| | | |||| ||| | | | | | |||| Sbjct 128018 TCTTTAACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT-ATAAAT 128076 Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 ||| || |||||| ||| || || ||||||||||| || | ||| || |||||| Sbjct 128077 TAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGT 128136 Query 14260 TAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAA 14317 ||| || || || || | ||||||| |||||||| || ||| | || | | || Sbjct 128137 TAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCACTG 128194 Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377 || |||||||| ||||| ||| |||| || | ||| |||| || || | Sbjct 128195 AATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAA-----TTAG 128249 Query 14378 TTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14435 | || ||||||||| |||||| | ||| ||||| | | || |||| | Sbjct 128250 TATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTA 128309 Query 14436 TAGCATTAAATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 14493 |||||| |||||||| | || |||| ||| | || ||| || ||||||| | ||| Sbjct 128310 TAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAATAA 128367 Query 14494 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGC 14553 ||||| |||| || || || ||||| | |||||| |||||| |||||| | | || Sbjct 128368 ACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGC 128427 Query 14554 TTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14613 ||||| ||| |||||| ||||| | |||||||| || ||||||||||| Sbjct 128428 TTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATC 128487 Query 14614 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673 ||| |||||||||||||| || | | || ||||| | || ||| | | | | ||| Sbjct 128488 ACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTT 128547 Query 14674 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAAC 14733 | |||| |||||| |||| | ||| | ||| || |||||||||| ||| | Sbjct 128548 CTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTC 128607 Query 14734 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14776 |||||| || || | |||| | ||| ||||||||| ||| Sbjct 128608 AGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 128650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482340577576440