Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq9 104 3e-17 seq7 98.7 1e-15 seq4 84.2 3e-11 >seq9 Length=776283 Score = 104 bits (114), Expect = 3e-17 Identities = 359/551 (65%), Gaps = 38/551 (7%) Strand=Plus/Plus Query 104215 AAATTTAATTTAAGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGA 104274 |||||| ||||||| || ||| || ||| |||||||||| ||| | || | | |||| Sbjct 511495 AAATTTGATTTAAGTCAATATTTCCCATTATTAACTACAAAGAAATTATTCTTAAGAGGA 511554 Query 104275 GTTGTAGAAGAACTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTG---TATTAAAT 104331 || | |||||| | | ||||||||||| || ||| ||| | | | |||||| Sbjct 511555 ATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGCTGTTAAAT 511614 Query 104332 CAAAAAGGAGTTAAAATTTGGAATAAAAATGCA-----GAATCGTTTTATACACAACAAA 104386 | || | | | | | |||| || | | |||| ||||| | | | ||| Sbjct 511615 AAGAATGTAAGGATA--TGGGAAGCTAATGGTACTAGGGAAT--TTTTAGATAATAGAAA 511670 Query 104387 ATCTTTT--Taaaaaa---aaTGATTTAGGACCTATTTATGGTTTTCAGTGGAGACATTA 104441 || ||| || | || || |||||||||||||||||||||||||| |||||||||| Sbjct 511671 ATTATTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAGACATTT 511730 Query 104442 TGG---TGAAAAT-TATAT-TGGGTG-CGATAATAAATATGGTGGTATAGATCAACTCAA 104495 || |||| || | || || || || || || || ||| | |||||| | || Sbjct 511731 CGGAGCTGAATATACAAATATGCATGATAATTATGAAAATAAAGGTGTTGATCAATTAAA 511790 Query 104496 AAATATTATTACAACAATTCAAAATGAACCTTGGGATAGAAGAATGATATTATTAGCTTG 104555 |||||| || | |||| ||||||| ||| ||||||||| | || | || || Sbjct 511791 AAATATAATAAATTTAATTAAAAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATG 511850 Query 104556 GAACCCAAAGGATAATTCTAAAATGGCACTTCCTCCTTGTCATTGTATAGCACATTTTGA 104615 ||| ||| ||| | |||||||| | |||||||||||| | || || ||| | Sbjct 511851 GAATGTAAAAGATCTTGACCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTA 511910 Query 104616 TGTAAGTTCAAAAATAAATGGTAAAAGAGAATTGTCTTGTCATTTATTTCAAAGATCTGC 104675 ||| || | ||| || |||| || ||| | | | |||||| || Sbjct 511911 TGT---TT------TCGATG------GAAAATTATCATGTATTATGTATCAAAGGTCATG 511955 Query 104676 AGATATGGGGTTGGGAGTTCCTTTTAACATAGCAAGTTATGCATTATTAACACATATAAT 104735 ||| | || | ||||| |||||||| || || |||| | | || || ||||| || Sbjct 511956 TGATTTAGGACTAGGAGTACCTTTTAATATTGCTTCTTATTCTATTTTTACTCATATGAT 512015 Query 104736 AGCTCATGTCT 104746 || || |||| Sbjct 512016 TGCACAAGTCT 512026 >seq7 Length=694560 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/225 (71%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 188865 ATCGCTTTGATCAAACATTTTTTCATGAAGAAATTTGGATATTCCATGTACAAGCATACA 188924 ||| |||| ||||| | | |||| | | | ||||| ||||||| | |||||| Sbjct 517174 ATCACTTTCTTCAAATAATCTTTCTTTTAACATTTTGGCAGATCCATGTGATATCATACA 517115 Query 188925 ATCTTTTTCCATTTCTCCGATTCTTAAACCTCCTTCATTTGCTCTCCCGTTTAGTGGTTG 188984 |||| ||||||||||||| | ||||| ||| || || ||| ||| || | | |||||| Sbjct 517114 ATCTCTTTCCATTTCTCCAAATCTTAGACCACCATCTCTTGATCTTCCTTCTGTTGGTTG 517055 Query 188985 CCTAGTAATTGCATGTCGTTTTTGGT-TTGTACTTGCTCTTGAAAATATTTTATCTGATA 189043 || ||||| || | ||| |||| | |||| ||||| | |||||||||| | Sbjct 517054 TCTTGTAAT--CA--TAGTTAATGGTCCTCTACT---TCTTGCATGTATTTTATCTTCAA 517002 Query 189044 CCATGTGCGTCAATCTGTGGTAATATACTGGTCCAAAGAAGATTT 189088 |||| || | ||||| || |||||| |||||||| || |||| Sbjct 517001 CCATATGTTTTAATCTTTGATAATATGTTGGTCCAATAAAAATTT 516957 >seq4 Length=1854454 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/157 (73%), Gaps = 8/157 (5%) Strand=Plus/Plus Query 188922 ACAATCTTTTTCCATTTCTCCGATTCTTAAACCTCCTTCATTTGCTCTCCCGTTTAG-TG 188980 ||||||| |||||||||| || | ||||||||||||||| |||| ||| || || || || Sbjct 211165 ACAATCTCTTTCCATTTCACCTAATCTTAAACCTCCTTCTTTTGATCTACC-TTCAGTTG 211223 Query 188981 GTTGCCTAGTAATTGCATGTCGTTTTTGGTTTGTACTTGCTCTTGAAAATATTTTATCTG 189040 |||| || || | | |||| |||| | || ||||| | | ||||||||| Sbjct 211224 GTTGTCTTGTGAGTAATTGTC----TTGG--TCCTCTAGCTCTAGCATGGATTTTATCTT 211277 Query 189041 ATACCATGTGCGTCAATCTGTGGTAATATACTGGTCC 189077 |||||| || | ||| | || ||||||| |||||| Sbjct 211278 GTACCATATGTTTTAATTTTTGATAATATATTGGTCC 211314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679807321432560