Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 118 8e-22 seq169 100 2e-16 >seq5 Length=2479031 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||| | ||| ||||| |||||||| || || || | | |||| | | |||||| Sbjct 2307615 TACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTC 2307674 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||| || ||| | || | |||||||||||| || | ||||| ||||| Sbjct 2307675 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTG 2307734 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 ||||| | ||| || | ||| || ||| ||||| |||| ||| || |||| Sbjct 2307735 AATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTT 2307794 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || || |||||||| ||||||||||||||||| Sbjct 2307795 TCCAGTTAATGTTTTAACAAAAATTTGCATTTT 2307827 >seq169 Length=6603 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | |||||| | || | ||| | ||| ||||| ||||||||||||||||| | Sbjct 5553 CCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGAT 5612 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||| |||||||| || ||| | || | ||||||||| || || Sbjct 5613 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGA 5672 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||||| | ||| || | ||| ||||||| |||||| Sbjct 5673 ATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGACG 5732 Query 18279 TCAATGGTGATGCTTTTGCC 18298 |||| ||| || |||| || Sbjct 5733 TCAAGGGTTATAGTTTTTCC 5752 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||||||||| ||||| || | | ||| | | || || |||||||| || Sbjct 5355 GTGGATTCTTTTTGAATATTGTAATCTGATAGAGTTCTTCCGTCCTCTAATTGTTTTCCG 5414 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| | || | ||||||||| || || | ||||| ||||| ||||| |||| || Sbjct 5415 GCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTT-TTGCTTT 5473 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | ||| |||||| || || || | || ||| |||| || || ||||| Sbjct 5474 AACATTCTCAATGGTGTCAGATGGTTCAACATCGAGAGTAATGGTTTTTCCTGTTAATGT 5533 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| |||||||||||||| Sbjct 5534 TTTAACAAAAATTTGCAT 5551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379340148828585