Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 405 6e-108 >seq6 Length=2947581 Score = 405 bits (448), Expect = 6e-108 Identities = 1118/1699 (66%), Gaps = 40/1699 (2%) Strand=Plus/Plus Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62302 || | ||||| || ||||| |||| || ||||| | | || ||| |||| Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAACACT 1353510 Query 62303 TCCACCATCTACCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62361 |||| | | || ||| | | || || || |||| |||||| ||| || || Sbjct 1353511 TCCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATA 1353569 Query 62362 AAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 || || | | | ||| || ||||| || ||||||||| || ||||| | | | Sbjct 1353570 AATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAAT 1353629 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 |||||||||| ||||| ||||| | || ||||||||||| | |||||| | ||| |||| Sbjct 1353630 AAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATG 1353689 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 62541 |||| ||||||||||| | ||||| ||||| | ||| | | | |||||| ||| Sbjct 1353690 CAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTT 1353749 Query 62542 TTAGATGTTCCCAATTCCAAAGATC-----CGACGGTACAACANNNNNNNNNNNATATTG 62596 ||| | ||||||| |||| | | || || || | |||| Sbjct 1353750 TTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAG--CATTCCACATATCAAATTG 1353807 Query 62597 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAG 62655 || || || | || || | || |||| ||| | ||||||||||| | | || Sbjct 1353808 TAATATTCCTTGGCTAGCTGGACT-TCCTTGATAGGATTCATATGGTCCATGTATAGAAG 1353866 Query 62656 CTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTA 62715 | | || | | | ||||| ||| | || || || |||||||| || | ||||| | Sbjct 1353867 CCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCA 1353926 Query 62716 GATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATC 62775 |||| ||| | ||| ||||||| |||| | ||||| | || ||||||| Sbjct 1353927 ATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATC 1353986 Query 62776 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 62835 |||| ||||||||||| |||||||| ||||| |||| || ||| || ||| | | Sbjct 1353987 CTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGACTG 1354046 Query 62836 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62895 | |||||||| | ||||||||||||| | ||||||| ||| | ||| | || | Sbjct 1354047 GGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTCAT 1354106 Query 62896 TCAGTTTGAGAAAATCAAATCGCCCATCTATTACAAAC------ATGTTCA--ATGCAAC 62947 | || ||||| |||| | | | || |||| || | || | || | Sbjct 1354107 ATAACTTTTTAAAATTAAATT--CTTTTTTTTCCAAATCTACAAATTTACATAAAGCTAT 1354164 Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 |||||||| |||||| || || || |||| || | ||||| ||| || ||| || Sbjct 1354165 AGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACA 1354224 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 | |||||||| || ||||| |||||||||| ||||||| || ||||| | ||| Sbjct 1354225 TAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAATC 1354284 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||||| | || |||| ||| ||||| || || || || || || ||| | Sbjct 1354285 TTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAA 1354344 Query 63128 GACTCGAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTATAGAGTATACAA 63184 || |||| | | | ||| | || | | |||| ||| ||| |||||| || Sbjct 1354345 ATCTTGAGCAAGAACTGT---TTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAA 1354401 Query 63185 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAA 63244 | ||| || || || ||||| | || | |||||||||| |||||||| | Sbjct 1354402 TTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAG 1354461 Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1354462 GGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATA 1354521 Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364 ||||| ||||| || ||| ||| || ||||| ||| || | | ||| | || | Sbjct 1354522 AAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAATTC 1354581 Query 63365 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424 | ||||| |||||||| ||||| | || | || | | ||| ||||| ||| Sbjct 1354582 AAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCTCC 1354641 Query 63425 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63484 || ||||||| ||||| || |||| |||| ||||||| ||||| || | | ||| || Sbjct 1354642 ACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCATT 1354701 Query 63485 TGATATACCATTGGTACCGGAGATAT-AGCCTCCACTGGCACGAATATTACT--AATTGA 63541 ||||| ||||||||||| |||| || | | | | ||| || | || Sbjct 1354702 AGATATTCCATTGGTACCTCTAATATAAGAAT---TTTGTCCTCTTATGTCTTGTACTGC 1354758 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| || || ||||| ||||| ||||| || ||| |||||| || ||| | || Sbjct 1354759 TACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAAAT 1354818 Query 63602 GCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 ||||| || ||| | |||| | ||| || ||||| ||||||||| | | | Sbjct 1354819 ACCTTCAATAGAATCTGCTTTCATCGATAA-TAAGAAACAAGAAGACATTTGTGGTCTGG 1354877 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 || || | ||||||||| ||||||| || || || || |||| | ||| | || || Sbjct 1354878 GCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAAAT 1354937 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780 || || || | |||| |||||||| | ||| || || | | || | ||||| Sbjct 1354938 GATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCATTA 1354997 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 | | || ||||||||||||| |||||| || || || || || || ||| |||||| Sbjct 1354998 ATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCA 1355057 Query 63841 AAGTTTTAAAACCAAAATA 63859 | |||||||| |||||||| Sbjct 1355058 AGGTTTTAAATCCAAAATA 1355076 Score = 167 bits (184), Expect = 3e-36 Identities = 280/400 (70%), Gaps = 4/400 (1%) Strand=Plus/Plus Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 |||| ||||| ||| ||||| || || |||||||| ||| || ||||||| Sbjct 128252 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTATA 128311 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 128312 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 128371 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 || |||| |||||||| ||||| | || || ||||| || || | | || || Sbjct 128372 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 128431 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACT 33991 || || || || ||| | ||||| | || || ||||| || ||||| |||||||| Sbjct 128432 GTTATTTGAACCTCTCTTAAAAATT-TACTAGCCAAATTCTCTAATACTATACCATCACT 128490 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 34050 ||||||||||| || || ||||| |||||||||| ||| || | || || | ||| | Sbjct 128491 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT-TGTCATTCAATTTCT 128549 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || | Sbjct 128550 CAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAG 128609 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 34150 | || || || | || ||| | ||| ||||| ||||| Sbjct 128610 CTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGG 128649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811042024240