Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 650 0.0 seq4 95.1 1e-14 >seq6 Length=2947581 Score = 650 bits (720), Expect = 0.0 Identities = 1201/1741 (69%), Gaps = 48/1741 (3%) Strand=Plus/Plus Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 ||||| || || ||| ||||| || ||||| || | |||| ||||| || ||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC---TAAATGTTGAATAGAA 37053 || || ||||| || | | |||| | |||||||| || || || ||||| | Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAGTCATCTGGTATTTCACTTATATATTGAACACTT 1353511 Query 37054 CCATTATGTAACAC-AATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAG 37112 ||||| || | |||||| | || ||||| | || ||| | | ||| | || Sbjct 1353512 CCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATAA 1353570 Query 37113 TTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATA 37172 ||| | || | || ||||| ||||| ||| |||||| ||| |||||||| ||| Sbjct 1353571 ATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAATA 1353630 Query 37173 TATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGC 37232 ||||| |||||||||||||||| ||| |||||||| | | ||||| || |||||||| Sbjct 1353631 AATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATGC 1353690 Query 37233 AGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTT 37292 ||| ||||| ||||||| || | ||||| || ||||| || |||| | ||| Sbjct 1353691 AGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTTT 1353750 Query 37293 TAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATTGTA 37348 || ||||| ||||||||| | || |||| ||||| | ||||||||| |||||| Sbjct 1353751 TAATTCATCCCAATCCCA-ATATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTA 1353809 Query 37349 GAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTA 37408 || |||| || |||||| | | ||| | ||||| ||||| | || ||| | Sbjct 1353810 ATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGAAGCCA 1353869 Query 37409 GTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTA 37465 ||| ||| ||| ||||| || ||||| || |||||||| || ||| | |||| | Sbjct 1353870 ATTC--AAC-AGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCA 1353926 Query 37466 ATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAAC 37525 || |||||| | || || ||| ||| | ||||| ||||| ||| || || | Sbjct 1353927 ATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATC 1353986 Query 37526 CCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTG 37585 | || ||||| ||||| || ||||| ||| | |||| ||| | | ||| | |||| Sbjct 1353987 CTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGACTG 1354046 Query 37586 GATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTC 37645 | |||||||| | ||||| ||||||| || |||| | | ||||| |||||| Sbjct 1354047 GGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTCAT 1354106 Query 37646 TCAACTTGTCGAACATAAATACGTTATT------ATTAACAAATTTACTCAACGAAATAG 37699 ||||| | || ||||| | || || || |||||||||| || | |||| Sbjct 1354107 ATAACTTTTTAAAATTAAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAG 1354166 Query 37700 ATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGA 37759 || | | ||||||||||||||||||||| | || ||| |||||| || ||| | Sbjct 1354167 ATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACATA 1354226 Query 37760 GATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTT 37819 ||||| || |||| || || ||||| ||||||| ||||| |||||||||||||| Sbjct 1354227 AGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAATCTT 1354286 Query 37820 TATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATA-ATAGATTTCCATAAA 37878 |||||| ||||| || ||| ||||||||| || | | | |||| ||||||| Sbjct 1354287 TATATAACATATATGGTACACCTGTTTCTATTTG-GCTTTGTAATATAGCAAACCATAAA 1354345 Query 37879 CTTCTTGCTTTAACGATCGCTTTAAttt------ttttCTTTGTTTCGTATTCTATATAT 37932 ||||| | || | ||| ||| ||||||| ||| |||| ||||| Sbjct 1354346 --TCTTGAGCAA--GAACTGTTTTTTTTCCCATATTTTCTTC--TTCATATTTAGTATAT 1354399 Query 37933 AATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATT 37992 ||||| | ||| || | |||||| || | ||| ||||||||||| |||||||||| Sbjct 1354400 AATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATT 1354459 Query 37993 AGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCA 38052 || | ||| | || || || || || | | |||||| | |||||| ||||||| ||| Sbjct 1354460 AGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCA 1354519 Query 38053 GTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA 38112 |||||||||| | ||| ||||||| || || ||| || ||||| || ||| Sbjct 1354520 TAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAAT 1354579 Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 || |||||||| | ||||||||||| ||||||| | | | |||| | ||| | Sbjct 1354580 TCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCT 1354639 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 || || |||| | |||||| | |||| |||| | | ||||||||||||||||| |||| Sbjct 1354640 CCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCA 1354699 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATAT----TACTTAT 38288 |||||| | || || |||| ||||||| | | ||| ||| | |||| Sbjct 1354700 TTAGATATTCCATTGGTACCTCTAATATAAGAATTTTGTCCTCTTATGTCTTGTACT--G 1354757 Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAA 38347 | ||| || || || |||||| ||||| | |||||||| |||||||||| || |||| Sbjct 1354758 CTACA--CCAATACCTCCTGCA-GTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAA 1354814 Query 38348 ATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCA 38407 | |||||||| ||| || | || || | || || |||||| ||||||||| || Sbjct 1354815 AAATACCTTCAATAGAATCTGCTTTCATCGATAATAAGAAACAAGAAGACATTTGTGGTC 1354874 Query 38408 ATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAAT 38467 || || || | |||||||||||||||| |||||| |||| |||| | |||| Sbjct 1354875 TGGGCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTA 1354934 Query 38468 AATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCA 38527 ||| ||||||||||| | | |||||||||| | || ||||| | ||| || |||| Sbjct 1354935 AATGATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCA 1354994 Query 38528 TTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT-CTGTTTAAGTAGATACGATTTT 38586 ||| | |||||| |||||||| || ||||||||||| | ||| || ||| ||| || Sbjct 1354995 TTAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAA-TAAATAAGATCTT 1355053 Query 38587 TCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTATTACATTA 38646 || || ||||| | |||||||||| ||| | |||| ||| || ||||| | ||| Sbjct 1355054 TCCAAGGTTTTAAATCCAAAATAATCATAATTAAAATCCCTAGTATAATCTATTTCTTTA 1355113 Query 38647 T 38647 | Sbjct 1355114 T 1355114 Score = 280 bits (310), Expect = 1e-70 Identities = 549/795 (69%), Gaps = 20/795 (3%) Strand=Plus/Plus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 |||||||| || || || |||| ||||| || | ||||| | | || ||||| | | Sbjct 127814 TCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTT 127873 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || ||| | ||| || ||||| | ||||||||||||||| || ||||||||| Sbjct 127874 GAATGGAAAATTTTAGAGCATCCTAAACATTCTAATAATCTATCTGCAACAAATTCTATA 127933 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATC-CACCGGAAT-AGCAACTGTCA 11540 || |||||||| | | | ||||||||||||| | ||| || | ||| | || | Sbjct 127934 TATTGAGACATAAGTCTAGAATTCATACCTATTAAATCACATGGTAATGATTCACATATA 127993 Query 11541 AAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAAC--TTCCT-TAG 11597 ||| || |||| | | || || || | | || | || || | || | | | Sbjct 127994 AAAGATC--TTTCAACTTCTACAGCTTCTTTAACAAT--ATTTTGTACCATTTGTTCTGG 128049 Query 11598 ATGGTGG--ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTC 11655 | | | || ||||||| || | ||||| || |||||| ||||| ||||| Sbjct 128050 AAGTTTATTATCTAATAAAC---TATAAATTAAGCAATTAAAATCTGTATGTAGTCCTTC 128106 Query 11656 GTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA-TCAATCCTCGtttttttA 11714 ||||||||||||| ||||||| ||||||||| || | | | || | ||||||| | Sbjct 128107 ATCTCTACTTATTAATTCATTACTAAATGTTAAACCATGTAATTTATTTT-GTTTTTTAA 128165 Query 11715 TCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTA 11774 |||||| |||||| ||| |||| || |||||||| || ||| |||| |||| Sbjct 128166 ACCAAAAAATAGCACAAAAGCTACCACTGAATAATATTCCTTCAACACATGCATTAGCTA 128225 Query 11775 CTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCT 11834 ||| ||||| || || || | | ||||||||| ||||| ||||| | Sbjct 128226 CTATCCTTTCAGCAAATGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTAT 128285 Query 11835 TTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCT 11893 ||||||| ||| || |||||||||| | |||||||| | | ||||| | | |||| Sbjct 128286 TTTTTACTGCAGGG-ATATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCT 128344 Query 11894 CTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATT 11953 | | ||| |||| |||||||||||||| ||||||||||||||||||| | ||||||| Sbjct 128345 TTAATATAATTATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATT 128404 Query 11954 TGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC-CGC 12012 ||||| ||| || | ||| |||| || || | | | ||||| || | || Sbjct 128405 TGAAAAGAATAAAATTTTTTTGCTTCTGTTATTTGAACCT-CTCTTAAAAATTTACTAGC 128463 Query 12013 TAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 |||||||| ||| ||||||||||| | |||||||||||||| | ||| |||||||| Sbjct 128464 CAAATTCTCTAATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAA 128523 Query 12073 GTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTC 12132 | ||| || | | | | ||||| || |||| | |||||| | |||||||| | ||| Sbjct 128524 ATGTTTCTCATTGTCATTCAATTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTC 128583 Query 12133 TTCAACGGTCCaaaa 12147 ||| | |||||||| Sbjct 128584 TTCTGCTGTCCAAAA 128598 >seq4 Length=1854454 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/185 (73%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 108139 AAACAAAAGTATTTATGGGGCCTATATATTATCTTAGACTTAGACATCTAACACAGGATA 108198 ||||| | |||||||||| || |||||||||| | | | | |||| | ||| |||| Sbjct 211331 AAACATATATATTTATGGGACCAATATATTATCAAAAATTAAAACATATGGTACAAGATA 211272 Query 108199 AGGCTACCGTTAGATGTAGAGGGaaaaaaaCAAA-ACTTATTCGTCAAGCTAATGAAGGT 108257 | | |||| |||||| | || |||| ||| | | ||| | | ||||||| Sbjct 211271 AAATCCATGCTAGAGCTAGAGG-ACCAAGACAATTACTCACAAGACAACCAACTGAAGGT 211213 Query 108258 AGACGAAAAGGAGGTGGTATTAAGTTT-GGTGAAATGGAAAGAGATTGTCTAATAGCTCA 108316 ||| ||||| ||| ||| ||||| || ||||||||||||||||||||| ||||||| | Sbjct 211212 AGATCAAAAGAAGGAGGT-TTAAGATTAGGTGAAATGGAAAGAGATTGTTTAATAGCATA 211154 Query 108317 TGGTG 108321 ||||| Sbjct 211153 TGGTG 211149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519921485520