Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 390 1e-103 >seq6 Length=2947581 Score = 390 bits (432), Expect = 1e-103 Identities = 1115/1699 (66%), Gaps = 40/1699 (2%) Strand=Plus/Plus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 65095 || | ||||| || ||||| |||| || ||||| | | || ||| |||| Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAACACT 1353510 Query 65096 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154 |||| | || || ||| | | || || || |||| |||||| ||| || || Sbjct 1353511 TCCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATA 1353569 Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 || || | | | ||| |||||||| || |||||||||| || ||||| | | | Sbjct 1353570 AATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAAT 1353629 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 |||||||||| ||||| ||||| | || ||||||||||| | |||||| | ||| |||| Sbjct 1353630 AAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATG 1353689 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT 65334 |||| ||||||||||| | ||||| ||||| | ||| | | | |||||| ||| Sbjct 1353690 CAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTT 1353749 Query 65335 TTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTTG 65389 ||| ||||||| |||| | | || | | | ||| Sbjct 1353750 TTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATTG 1353807 Query 65390 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 65448 || || || | || || | || |||| ||| | || |||||||| | | || Sbjct 1353808 TAATATTCCTTGGCTAGCTGGAC-TTCCTTGATAGGATTCATATGGTCCATGTATAGAAG 1353866 Query 65449 CTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 65508 | | |||| | | ||||| ||| | || || || ||||| || || | ||||| | Sbjct 1353867 CCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTCA 1353926 Query 65509 GATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566 |||| ||| | ||| ||| ||||||| |||| | ||||| | |||||||| Sbjct 1353927 ATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTAA 1353984 Query 65567 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 65626 |||||| ||||||||||| |||||||| ||||| |||| || ||| || ||| | Sbjct 1353985 TCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGAC 1354044 Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 65686 || |||||||| | ||||||||||||| | ||||||| ||| | ||| | || Sbjct 1354045 TGGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTC 1354104 Query 65687 CTTCAGTTTGAGAAAATCAAATCGCTCATCT-----AT-TACAAACATGTTCAATGCAAC 65740 | | || ||||| |||| | | | || |||||| | || || | Sbjct 1354105 ATATAACTTTTTAAAATTAAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTAT 1354164 Query 65741 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 65800 |||||||| |||||| || || || |||| || | ||||| ||| || ||| || Sbjct 1354165 AGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAACA 1354224 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 | |||||||| || || || |||||||||| ||||||| || ||||| | ||| Sbjct 1354225 TAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAATC 1354284 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920 ||||| | || |||| ||| ||||| || || || || || || ||| | Sbjct 1354285 TTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAA 1354344 Query 65921 GACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACAA 65977 || |||| | | | ||| | || | |||||| ||| ||| ||||| || Sbjct 1354345 ATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAA 1354401 Query 65978 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 66037 | ||| || || || ||||| | || || |||||||||| |||||||| | Sbjct 1354402 TTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAG 1354461 Query 66038 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1354462 GGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATA 1354521 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 ||||||||||| | ||| ||| || ||||| ||| || | | ||| | || | Sbjct 1354522 AAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAATTC 1354581 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | ||||| ||||||| ||||| | || | || | | ||| ||||| ||| Sbjct 1354582 AAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCTCC 1354641 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 || ||||||| ||||| || |||| |||| ||||||| ||||| || | | |||||| Sbjct 1354642 ACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCATT 1354701 Query 66278 GGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTTGCACGAATATTACT--AATTGA 66334 ||| | |||||||| || |||| || | ||| | ||| || | || Sbjct 1354702 AGATATTCCATTGGTACCTCTAATATAAGAAT---TTTGTCCTCTTATGTCTTGTACTGC 1354758 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 || ||| || || ||||| ||||| ||||| || ||| |||||| || ||| | || Sbjct 1354759 TACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAAAT 1354818 Query 66395 GCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 || || ||| ||| | |||| | ||| || ||||| ||||||||| | | Sbjct 1354819 ACCTTCAATAGAATCTGCTTTCATCGATAA-TAAGAAACAAGAAGACATTTGTGGTCTGG 1354877 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 || || | ||||||||| ||||||| || || || || |||| | ||| | || || Sbjct 1354878 GCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAAAT 1354937 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 || || || | |||| |||||||| | ||| || || | | || | ||||| Sbjct 1354938 GATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCATTA 1354997 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 | | || ||||||||||||| || || || || || || || || ||| |||||| Sbjct 1354998 ATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCA 1355057 Query 66634 AAGTTTTAAAACCAAAATA 66652 | |||||||| |||||||| Sbjct 1355058 AGGTTTTAAATCCAAAATA 1355076 Score = 185 bits (204), Expect = 1e-41 Identities = 582/890 (65%), Gaps = 20/890 (2%) Strand=Plus/Plus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 ||| | ||| ||||| |||||| || || | || | ||| |||||||| || ||||| Sbjct 127771 TTGGGCCATGACTCCTGATTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTT 127830 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 |||| | ||| || ||||| ||| ||||||||| | || ||||||| Sbjct 127831 TCCTTGAAGTGAAATTAAGTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGA 127890 Query 35968 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 |||| || ||| ||| ||||||||||| ||||||||||||||| ||| | Sbjct 127891 GCATCCTAAACATTCT--AAT-AATCTATCTGCAACAAATTCTATATATTGAGACATAAG 127947 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 36082 | | ||||||| ||||| | | | ||| | || |||| | || |||| ||| Sbjct 127948 TCTAGAATTCATACCTATTAAATCACATGGTAATGATTCACATATAAAAGATCTT--TCA 128005 Query 36083 ATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATAC---AAT 36139 | || || ||| | | |||| | ||| ||| ||| || || ||| Sbjct 128006 ACTTCTACAGCTTCTTTAACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAAT 128065 Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199 ||| || | || || || ||||| ||||| || || |||||||| |||||| Sbjct 128066 AAAC---TATAAATTAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAAT 128122 Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || || ||| || | || | | | | ||||||| |||||| || | | || Sbjct 128123 TCATTACTAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAG-CACA 128181 Query 36260 AATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 || | | ||| || || |||||||| || ||| || | | || || || | Sbjct 128182 AAAGCTACCACTGAATAATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAA 128241 Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 | | |||| ||||| ||| ||||| || || |||||||| ||| || Sbjct 128242 TGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGAT 128301 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 | |||||||||| ||| | || | |||| || |||||||| ||| ||||||| Sbjct 128302 ATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAAT 128361 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 || | |||||| |||| |||||||| ||||| | || |||||||| || || Sbjct 128362 TAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTT 128421 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTA 36557 | | || || || || || || ||| | ||||| | || || ||||| || |||| Sbjct 128422 TTTTGCTTCTGTTATTTGAACCTCTCTTAAAAATT-TACTAGCCAAATTCTCTAATACTA 128480 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||| ||||||||||| || || ||||| |||||||||| ||| || || Sbjct 128481 TACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCAT 128540 Query 36618 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 36677 | | ||| | |||| || | ||| |||||| ||| | |||||| |||||||||||| Sbjct 128541 TCAATTTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATG 128600 Query 36678 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 36727 | || || || || || || | || ||| | ||| ||||| |||||| Sbjct 128601 AAGCTTCAGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 128650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165946775720