Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 464 9e-126 >seq6 Length=2947581 Score = 464 bits (514), Expect = 9e-126 Identities = 1137/1702 (67%), Gaps = 46/1702 (3%) Strand=Plus/Plus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 78974 || | ||||| || ||||| |||| || ||||| | | || ||| |||| Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAACACT 1353510 Query 78975 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 79033 |||| | || || ||| | | || || ||||||| |||||| ||| || || Sbjct 1353511 TCCATTGTGAGCTATTAATTGTTGT-TTCATGTCTTCATCCCATAAACCTCTTTCAAATA 1353569 Query 79034 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093 || || | | | ||| |||||||| || |||||||||| || ||||| | | | Sbjct 1353570 AATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAAT 1353629 Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153 |||||||||| ||||||||||| | |||||||||||||| | |||||| | ||| |||| Sbjct 1353630 AAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATG 1353689 Query 79154 CCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGAT--CTGATTTTATC 79211 | |||||||||||||| | ||||| ||||| | ||| ||| | | |||||| | Sbjct 1353690 CAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACC--ATGCTTACGAATTTTAGC 1353747 Query 79212 TTTTAGAGATTCCCAATCCCAA------AGATCAGACGGGACAACATTCCAAAGATCATA 79265 ||||| |||||||||||| |||| || | ||||||| | |||| | Sbjct 1353748 TTTTAATTCATCCCAATCCCAATATTTGTTATCA-AC--TTTAGCATTCCACATATCAAA 1353804 Query 79266 TTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTC 79325 ||||| || || | ||||| |||| || | |||||| ||||| | | Sbjct 1353805 TTGTAATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGA 1353864 Query 79326 GGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATT 79385 || |||||| | | ||||| || | || || || ||||| || || | ||||| Sbjct 1353865 AGCCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATT 1353924 Query 79386 GAGATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 | |||| ||| | | | | ||| ||||||| |||| | ||||| | ||||||| Sbjct 1353925 CAATTCTTTTGCAGCATCAGAT-TCATATGGATATCTTAATAACATAAATGTATCTGCTA 1353983 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 ||||||| ||||||||||| |||||||| ||||| |||| || ||| || ||| | Sbjct 1353984 ATCCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGA 1354043 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 || |||||||| | ||||||||||||| | ||| ||| || | ||| | | Sbjct 1354044 CTGGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTT 1354103 Query 79565 CCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTACAA----ACATGTT----CAACGC 79616 | | || || ||||| |||| || | | || ||| ||| || || || Sbjct 1354104 CATATAACTTTTTAAAATTAAAT--TCTTTTTTTTCCAAATCTACAAATTTACATAAAGC 1354161 Query 79617 GACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGT 79676 | |||||||| |||||| || || || |||| || | ||||| ||| |||||| Sbjct 1354162 TATAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACA 1354221 Query 79677 GCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 79736 || | ||||||||| ||||| || |||||||||| ||||||| || ||||| | Sbjct 1354222 ACATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGA 1354281 Query 79737 ATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 ||| ||||| | || | || ||| ||||| || || || || || || ||| Sbjct 1354282 ATCTTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCA 1354341 Query 79797 GACGACTCGAGCCTTTATTATAGACTTGTATC---TCTTTTCTCTTTCGTATTGTGTATA 79853 | || |||| | | | || | || | |||||| ||| |||| ||||| Sbjct 1354342 TAAATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATA 1354398 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 |||| ||| || || || ||||| || ||| || |||||||| | |||||||| Sbjct 1354399 TAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACAT 1354458 Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 | | ||| | | || || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1354459 TAGGGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGC 1354518 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 ||||| ||||| | ||| || || ||||| ||| || | | ||| | || Sbjct 1354519 ATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAA 1354578 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | ||||| |||||||| ||||| | || | || | | ||| ||||| Sbjct 1354579 TTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCC 1354638 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||||| ||||| || |||| |||| ||||||| ||||| || | | ||| Sbjct 1354639 TCCACCTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACC 1354698 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACT--AAT 80210 ||| ||| | |||||||| || |||| || | | | | ||| || | Sbjct 1354699 ATTAGATATTCCATTGGTACCTCTAATATAAGAAT---TTTGTCCTCTTATGTCTTGTAC 1354755 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 || || ||| || || ||||| ||||| ||||| || ||| |||||| || ||| | Sbjct 1354756 TGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAA 1354815 Query 80271 GATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329 || || || || ||| | |||| | ||| || ||||| ||||||||| | | Sbjct 1354816 AATACCTTCAATAGAATCTGCTTTCATCGATAA-TAAGAAACAAGAAGACATTTGTGGTC 1354874 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 || || | ||||||||| ||||||| || || || || |||| | ||||| || Sbjct 1354875 TGGGCGTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTA 1354934 Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCA 80449 || || || || | |||| |||||||| | ||| || || | | || | || Sbjct 1354935 AATGATATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCA 1354994 Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 |||| | || ||||||||||||| || || ||||| || || || |||||| ||| Sbjct 1354995 TTAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTT 1355054 Query 80510 CCAAAGTTTTAAAACCAAAATA 80531 |||| |||||||| |||||||| Sbjct 1355055 CCAAGGTTTTAAATCCAAAATA 1355076 Score = 172 bits (190), Expect = 8e-38 Identities = 277/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 |||| ||||| ||| ||||| || || |||||||| ||| || ||||||| Sbjct 128252 TCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTATA 128311 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 |||| ||| | || | |||| || |||||||| |||| |||| || || | |||| Sbjct 128312 GCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTA 128371 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 || |||| |||||||| ||||| | || || ||||| || || | | || || Sbjct 128372 TATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCT 128431 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || || || || ||| | ||||| ||| ||||| || ||||| || ||||| Sbjct 128432 GTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTT 128491 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||||||||| || || ||||| |||||||||||||| || ||| | | ||| | Sbjct 128492 GCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCA 128551 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 |||| || | ||| |||||| ||| | |||||| ||||||||||||| || || || Sbjct 128552 AAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCT 128611 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGG 50528 || || || | || ||| | ||| ||||| ||||| Sbjct 128612 TTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGG 128649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261321026120