Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6 224 1e-53 >seq6 Length=2947581 Score = 224 bits (248), Expect = 1e-53 Identities = 593/885 (67%), Gaps = 43/885 (5%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||| || || ||||| || || ||||| ||||| |||| ||||| || Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAA 13696 ||||| ||| ||||||||| |||| || | |||| || |||| |||||| Sbjct 127849 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 127908 Query 13697 TAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTA 13755 || ||||||| |||| ||| || |||||||||||||| || || | |||||||||||| Sbjct 127909 TA---ATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTA 127964 Query 13756 TTAGTTTTACAGG--AATTATATTGGT-TAAAAATTCTTT----TTCTATAGACACAGCC 13808 ||| | ||| | ||| || | ||||| ||||| ||||| |||| Sbjct 127965 TTAAATC-ACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTA------CAGCT 128017 Query 13809 TCTTTTATAATAATTGTAATAATCTCAT-TAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 ||||| | |||| || | || | | | |||| ||| | | | | | |||| Sbjct 128018 TCTTTAACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT-ATAAAT 128076 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 ||| || |||||| ||| || || ||||||||||| || | ||| || |||||| Sbjct 128077 TAAGCAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGT 128136 Query 13928 TAATCC-TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG--ACC-CGG 13983 ||| || || || || | ||||||| |||||||| || ||| |||| | ||| | | Sbjct 128137 TAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCACTG 128194 Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043 || | ||||||| ||||| ||| |||| || | ||| |||| || || Sbjct 128195 AATA--ATATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAA-----TT 128247 Query 14044 TGTTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 || || ||||||||| |||||| | ||| ||||| | | || |||| Sbjct 128248 AGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTC 128307 Query 14102 AATAGCATTAAATAAATAT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 ||||||| |||||||| | || |||| ||| | || ||| || ||||||| | | Sbjct 128308 TATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAAT 128365 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 || ||||| |||| || || || ||||| | |||||| |||||| |||||| | | Sbjct 128366 AAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTT 128425 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 ||||| | ||| || || ||||| | |||||||| || ||||||||| Sbjct 128426 GCTTCTGTTATTTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCA 128485 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||||| |||||||||||||| || | | || ||||| | || ||| | | || | | Sbjct 128486 TCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAAT 128545 Query 14340 TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399 || | |||| |||||| |||| | ||| | ||| || |||||||||| ||| Sbjct 128546 TTCTCAAAATCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCT 128605 Query 14400 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGA 14444 ||||||| || || | |||| | ||| ||||||||| ||| Sbjct 128606 TCAGCTTTCTTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 128650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723004832200