Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6 237 2e-57 >seq6 Length=2947581 Score = 237 bits (262), Expect = 2e-57 Identities = 590/876 (67%), Gaps = 25/876 (3%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||||||||| || || ||||| || |||||||| ||||| |||| ||||| || Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| ||| |||||||||| |||| || | |||| || |||| | ||| Sbjct 127849 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 127908 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTA 13546 ||||||||| |||| ||| || |||||||||||||| || || | ||||||||||||||| Sbjct 127909 TAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTATTA 127967 Query 13547 GTTTTACAGG--AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 13604 | ||| | ||| || | | || ||| | |||| | ||||| || || | Sbjct 127968 AATC-ACATGGTAATGAT-TCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAAC 128025 Query 13605 AATAATCTTAATAATGTCAT-TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13663 |||| | | | || | | | |||| ||| | | | | | ||||||| || Sbjct 128026 AATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT-ATAAATTAAGCAAT 128084 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 13722 |||||| ||| || || ||||||||||| || | ||| || ||||||||| || | Sbjct 128085 TAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAACCAT 128144 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATAT 13781 | || || | ||||||| |||||||| || ||| | || | | || || ||||| Sbjct 128145 GTAATTTATTTT-GTTTTTTAAACCAAAAAATAGCA-CAAAAGCTACCACTGAATAATAT 128202 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT-- 13839 ||| ||||| ||| |||| || | ||| |||| || || || | || Sbjct 128203 TCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAA-----TTAGTATCATTA 128257 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||||||| |||||| | ||| ||||| | | || |||| || |||| Sbjct 128258 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTATAGCATGA 128317 Query 13900 AATAAATGT--TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 ||||||| | || |||| ||| | || ||| || ||||||| | ||| ||||| Sbjct 128318 AATAAATTTAATCTTTCTTTTTCATCTTT--AATATAATTATCAATTAATAAACTATATG 128375 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 |||| || || || ||||||| |||||| |||||| |||||| | | ||||||| Sbjct 128376 TTTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTA 128435 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||| ||||| ||||| || || ||||| || || || ||||||||||| ||| Sbjct 128436 TTTGAACCTCTCTTAAAAAT-TTACTAGCCAAATTCTCTAATACTATACCATCACTTGCT 128494 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 ||||||||||| || | | || ||||| | || ||| | | || | ||| | || Sbjct 128495 GCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAA 128554 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || |||||| |||| | ||| | ||| || |||||||||| ||| ||||||| Sbjct 128555 TCTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTC 128614 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGA 14232 || || | |||| | ||| ||||||||| ||| Sbjct 128615 TTGTAAAAATCCCAAACTTCAGGATATAATATTGGA 128650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478583816694120