Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 430 2e-115 >seq6 Length=2947581 Score = 430 bits (476), Expect = 2e-115 Identities = 1119/1697 (66%), Gaps = 36/1697 (2%) Strand=Plus/Plus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| ||||| ||||||||||||||||| | || || ||||||| ||||||| Sbjct 1353392 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1353451 Query 71002 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 71057 || | ||||| || ||||| |||| || ||||| | | || ||| |||| Sbjct 1353452 CATACTGTTTTGTACAACTCCTTTAAG-TCATCTGGTATTTCACTTATATATTGAACACT 1353510 Query 71058 TCCACCATCTGCAAT-AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 71116 |||| | || || ||| | | ||| || ||||||| |||||| ||| || || Sbjct 1353511 TCCATTGTGAGCTATTAATTGT-TGTTTCATGTCTTCATCCCATAAACCTCTTTCAAATA 1353569 Query 71117 AAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGT 71176 || || | | | ||| |||||||| || |||||||||| || ||||| | | | Sbjct 1353570 AATCTTTTAACAAATGGGGATTAACAACGAAAAATTCTCCACTTAAAACTCTTCTATAAT 1353629 Query 71177 AAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 71236 |||||||||| ||||| ||||| | || ||||||||||| | |||||| | ||| |||| Sbjct 1353630 AAATATTACTAGTATATGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGAAGTAGATG 1353689 Query 71237 CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTT 71296 |||| ||||||||||| | |||| ||||| | |||||| || |||||| ||| Sbjct 1353690 CAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGCTTACGAATTTTAGCTT 1353749 Query 71297 TTAGAGATTCCCAATTCCAAAGATCCGATGGTA-CAA------CNNNNNNNNNNNNNNNN 71349 ||| |||||| ||| || || || || ||| | Sbjct 1353750 TTAATTCATCCCAA-TCCCAATAT---TTGTTATCAACTTTAGCATTCCACATATCAAAT 1353805 Query 71350 NNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCG 71409 || || | ||||| |||| ||| | || |||||||| | | | Sbjct 1353806 TGTAATATTCCTTGGCTAGCTGGACTTCCTTGATAGGATTCATATGGTCCATGTATAGAA 1353865 Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469 || | |||| | | ||||| || |||| || || ||||| || || | ||||| Sbjct 1353866 GCCAATTCAACAGACATTTCTAAAGCAGCATAGTACATTGTTTCAAATATTCTTTTATTC 1353925 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 | |||| ||| | ||| ||||||| |||| | ||||| | ||||||||| Sbjct 1353926 AATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAAT 1353985 Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATA 71589 ||||| || |||||||| |||||||||||||| |||| || ||| || ||| | Sbjct 1353986 CCTTGTACACCAATACCAATAGGTCTGTGTCTAGTATTGGATGTTTTTGCCTCTTTGACT 1354045 Query 71590 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCC 71649 || |||||||| | ||||||||||||| | ||||||| || | ||| | || Sbjct 1354046 GGGTAATAATTTCTTTCTATAATTTTATCTAAATTTCTGGTAATAATTTTAGTAATTTCA 1354105 Query 71650 TTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAA----ACACGTT----CAAGGCAA 71701 | || || ||||| ||| | | | | || ||| ||| || || || | Sbjct 1354106 TATAACTTTTTAAAATTAAA--TTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTA 1354163 Query 71702 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGC 71761 |||||||| |||||| || || || |||| || | ||||| |||||||||| | Sbjct 1354164 TAGATGCCAAATTACATACAGCAACTTCATCAGGGGATGTATATTCTATAATTTCACAAC 1354223 Query 71762 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 71821 | | |||||||| || || || |||||||||| ||||||| || ||||| | || Sbjct 1354224 ATAAGTTACTACATTTAATAGTACCTAAATTTTTTTGATTAGATTTAGCATTACAAGAAT 1354283 Query 71822 CCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 71881 | ||||| | ||| | || ||| ||||| || || || || || || ||| | Sbjct 1354284 CTTTATATAACATATATGGTACACCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1354343 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 71941 || |||| | | | || || | |||||| ||| |||| ||||||||| Sbjct 1354344 AATCTTGAGCAAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATT 1354403 Query 71942 GTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||| || || || ||||| | | ||| || ||||||||||| |||||||| | | Sbjct 1354404 TTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACATTAGGG 1354463 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061 ||| | | || || || |||| |||||||| |||||||||| ||| | ||| || Sbjct 1354464 TCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAA 1354523 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 ||| ||||| | ||| || || ||||| ||| || | | ||| | || | | Sbjct 1354524 ATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGATTTTTCCTTAAATCTAAAAATTCAA 1354583 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 ||||| |||||||| ||||| | || | || | | ||| ||||| ||| | Sbjct 1354584 ATATATCTGAATGCCATGGTTCAATATAAACAGCAAAAGATCCTTTACGTTTTCCTCCAC 1354643 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 | ||||||| ||||| || |||| |||| ||||||| ||||| || | | |||||| | Sbjct 1354644 CTTGATCTACATATCTTGCAGTGTCATTAAAAACTCTTAACATAGGTACTAAACCATTAG 1354703 Query 72242 ATGCACCATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTGCT--AATTGATA 72298 || |||||||| || |||| || | | | | ||| || | || || Sbjct 1354704 ATATTCCATTGGTACCTCTAATATAAGAAT---TTTGTCCTCTTATGTCTTGTACTGCTA 1354760 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 ||| || || ||||| ||||| ||||| || ||| |||||| || ||| | || | Sbjct 1354761 CACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGAGTTTCAAAAATAC 1354820 Query 72359 CCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417 | || ||| ||| | |||| | ||| || ||||| ||||||||| | | Sbjct 1354821 CTTCAATAGAATCTGCTTTCATCGATAA-TAAGAAACAAGAAGACATTTGTGGTCTGGGC 1354879 Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || | ||||||||| ||||||| || || || || |||| | ||||| || || Sbjct 1354880 GTCCCTGAATTAAATAATGTAGGAGTTGCATGGGTGAAATATTTCTGAGACATTAAATGA 1354939 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || || | |||| |||||||| | |||||| || | | || | |||||| Sbjct 1354940 TATGTTTCTAGAGCTTTATCTATATCATCTATATGTATACCAATAGAAACTCTCATTAAT 1354999 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 | ||| ||||||||||||| || || ||||| || || || || ||| ||||||| Sbjct 1355000 AAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAAG 1355059 Query 72598 GTTTTAAAACCAAAATA 72614 |||||||| |||||||| Sbjct 1355060 GTTTTAAATCCAAAATA 1355076 Score = 167 bits (184), Expect = 3e-36 Identities = 603/930 (65%), Gaps = 25/930 (3%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGA--TTGTC--TTC-TTGAGACATAACTCCCAT 41772 ||||||| || | | | |||| ||| || | ||| ||| ||| | ||| ||||| Sbjct 127731 TTTAAAATTC--CGTGTTAAGACAAAAGACCTGGTCCTTTCGTTGGGCCATGACTCCTGA 127788 Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 |||||| || || | || | ||| |||||||| || || ||||||| | ||| || Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA---TTCAGA 41889 ||||| ||| || ||||| | || ||||||| |||| || ||| Sbjct 127849 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCT-- 127906 Query 41890 AATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 41949 ||| ||||||||||| | |||||||||||| ||| | | | ||||||| ||||| Sbjct 127907 AAT-AATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATACCTAT 127965 Query 41950 AAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 42007 | | | ||| | || |||| | || |||| |||| || || ||| | Sbjct 127966 TAAATCACATGGTAATGATTCACATATAAAAGATCTT--TCAACTTCTACAGCTTCTTTA 128023 Query 42008 ATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAATGTTTAAACATCAAA 42064 | |||| | ||| ||| ||| || || |||||| || | || || Sbjct 128024 ACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAAC---TATAAATTAAG 128080 Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || || || ||||||||||| |||||||| || ||| || | Sbjct 128081 CAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAA 128140 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || | | | | ||||||| |||||| |||| | |||| | | ||| || || Sbjct 128141 CCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAG-CACAAAAGCTACCACTGAATAA 128199 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 |||||||| || ||| || | | || || || | | | |||| || Sbjct 128200 TATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAATTAGTATCATTAAT 128259 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| ||| ||||| || || |||||||| ||| || ||||||| |||| ||| Sbjct 128260 CCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTTTCTATAGCATGAAA 128319 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 | || | |||| || |||||||| ||| |||| || || | |||||| |||| Sbjct 128320 TAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTTC 128379 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||||||||| ||||| | || || ||||| || || | | || || || | || Sbjct 128380 TGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTATTTG 128439 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || ||| | ||||| ||| ||||| || ||||| || ||||| |||||||| Sbjct 128440 AACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTGCAAA 128499 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 ||| || || ||||| |||||||||| ||| || | | ||||| | |||| || Sbjct 128500 AAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAATCTTT 128559 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 | ||| |||||| ||| | ||||||| | ||||||||||| ||||| || || || || Sbjct 128560 TAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCTTGTA 128619 Query 42604 CATATTCCAGATATCATGATATTGAATTGG 42633 | || ||| | ||| ||||| ||||| Sbjct 128620 AAAATCCCAAACTTCAGGATATAATATTGG 128649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132211763080