Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq169 91.5 1e-13 >seq169 Length=6603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || ||||| || | || ||||||||||| || |||||||| Sbjct 5325 CCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGAT 5384 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| || | |||||| || ||| | || | | ||| || || || || Sbjct 5385 AGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGA 5444 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||||| ||| | | || | ||||| | ||||| || Sbjct 5445 ATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACA 5504 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || |||||||| || || ||||||||| Sbjct 5505 TCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCATA 5552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507009120712560