Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq169 176 3e-39 seq5 118 8e-22 >seq169 Length=6603 Score = 176 bits (194), Expect = 3e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||| ||||| || | |||||| |||||||| || |||||||| | Sbjct 5325 CCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGAT 5384 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||| ||||||||||| || || |||| || | ||||||||| |||| Sbjct 5385 AGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGA 5444 Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || || ||||||| || ||| | || ||||| || ||| || Sbjct 5445 ATTCCTTCTTTATCTTGAATTTTTGCT-TTAACATTCTCAATGGTGTCAGATGGTTCAAC 5503 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | ||||||||||| ||||| | ||||| ||||||||||||||| Sbjct 5504 ATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCATA 5552 Score = 113 bits (124), Expect = 3e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | |||||| ||||| || | || || || ||||| |||||||| || | Sbjct 5553 CCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGAT 5612 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| ||||| |||| || | ||||||||| |||| Sbjct 5613 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGGA 5672 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATC 15303 ||||||||||| || |||||| ||||||| | || || || || Sbjct 5673 ATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTC 5719 >seq5 Length=2479031 Score = 118 bits (130), Expect = 8e-22 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| || || ||||| || |||| | |||||||||||||| ||| Sbjct 2307628 GTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 2307687 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || |||| || | |||||| || ||||||||||||||| || |||||| ||| Sbjct 2307688 GCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTC 2307747 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| | || || ||||| || ||||| | |||||| ||||| || || | ||| Sbjct 2307748 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTTAATGTT 2307807 Query 15347 TTTACAAAAATTTGCATATT-TGAAAATAA 15375 || |||||||||||||| || | ||||||| Sbjct 2307808 TTAACAAAAATTTGCATTTTCTTAAAATAA 2307837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175523088853