Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq169 118 7e-22 seq5 87.8 1e-12 >seq169 Length=6603 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | ||||| || || || || || |||||||| ||||||||||| || Sbjct 5324 ACCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGA 5383 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | ||| || ||||| ||||| ||||||||| | ||| ||||| | || Sbjct 5384 TAGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGG 5443 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || | | ||| ||||| |||| ||| Sbjct 5444 AATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAAC 5503 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || |||||||| || | ||||| || ||||||||||| Sbjct 5504 ATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 >seq5 Length=2479031 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || ||||| || || ||||| ||||| ||||| || || | | || || Sbjct 2307616 ACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCT 2307675 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| |||||| ||||||||| | ||| || || | || || |||||||| || | Sbjct 2307676 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGA 2307735 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 || |||| | || | | |||||| || || | ||| || || || || ||| Sbjct 2307736 ATTTTTGCCT---TCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTT 2307792 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || | ||||| || ||||||||||| || Sbjct 2307793 TTTCCAGTTAATGTTTTAACAAAAATTTGCATTTT 2307827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318774363710034