Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq169 143 2e-29 seq5 125 5e-24 >seq169 Length=6603 Score = 143 bits (158), Expect = 2e-29 Identities = 174/233 (75%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 |||| ||||| ||||||||||| || |||| ||| |||||||||||||| ||||| Sbjct 5323 AACCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATC-- 5380 Query 43953 TTAATTGACGCTCATC-GTCC---AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCC 44008 | || || | || || |||| ||||||||||| |||||||| || | ||| ||||| Sbjct 5381 -TGATAGA-GTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCA 5438 Query 44009 TGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGC 44068 | || | |||||||||||| ||||||| ||| || | ||| || || | || Sbjct 5439 GGTGGAATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGT 5498 Query 44069 TCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||||| ||||| ||||| || ||||| || || ||||| |||||||| Sbjct 5499 TCAACATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||||||||| || |||| || || |||||||| || || || Sbjct 5552 ACCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCTGA 5611 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| | |||| || ||||||||||| |||||||| || | ||| ||||| | || Sbjct 5612 TAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGTGG 5671 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||||||| || || | ||| ||| || | ||||| || Sbjct 5672 AATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCGAC 5731 Query 44074 ATCGACCGTAATTGTTTTACC 44094 || | || || ||||| || Sbjct 5732 GTCAAGGGTTATAGTTTTTCC 5752 >seq5 Length=2479031 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| |||| || || ||||||||||||||||| |||| | |||| || Sbjct 2307616 ACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCT 2307675 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| |||||||| || | ||| || || | || | |||||||||||| | Sbjct 2307676 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGA 2307735 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| || || | ||| ||||| | ||||| ||||| | ||||||||||| Sbjct 2307736 ATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTT 2307795 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || ||||| |||||||| Sbjct 2307796 CCAGTTAATGTTTTAACAAAAATTTGCAT 2307824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354773998231284