Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6 244 9e-60 seq7 82.4 7e-11 >seq6 Length=2947581 Score = 244 bits (270), Expect = 9e-60 Identities = 570/844 (68%), Gaps = 23/844 (3%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || || ||||| || ||||||||||||||||||| | ||||| Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA---CACCCTAATTCTAG 12975 ||||| ||| ||| |||||||| ||| | | | ||||| || ||||| | Sbjct 127849 GTCCATCCAATTGAATGGATTTTTTGAA---TGGAAAATTTTAGAGCATCCTAAACATTC 127905 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC-ACAGTTCATTCCTA 13034 ||| ||||| || |||||||| ||||| || || ||| || || | | ||||| |||| Sbjct 127906 TAATAATCTATCTGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATACCTA 127964 Query 13035 TTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATA 13093 |||| | ||| || | | ||| || ||| | |||| | || || ||||| || Sbjct 127965 TTAAATC-ACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTA 128023 Query 13094 ACTATGTCTCTTATTAC--GTTCTCTAA-TGGAGGATTTGATAGATGCTTAAACATCATA 13150 || || | | || | ||||| || | | || | ||| | || | || | Sbjct 128024 ACAATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAAC---TATAAATTAAG 128080 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || |||||| || | |||||||||||||||||||| || || |||||||| | Sbjct 128081 CAATTAAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAA 128140 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || | | | ||||||||| |||||| |||||| ||| ||| || ||| Sbjct 128141 CCATGTAATTTATTTTGTTTTTTAAACCAAAAAATAGCACAAAAGCTACCACTGAATAAT 128200 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 ||||||||||| |||| |||| | ||||||| || | | | || | | | | Sbjct 128201 ATTCCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAATTAGTATCATTA--- 128257 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGTT 13389 ||||| ||| ||||| |||||| | ||| || |||| ||||||||||| || | Sbjct 128258 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGG-ATATTTTCTATAGCATG 128316 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 |||||||| | |||| || ||| ||||||| |||| || ||||| ||||| | Sbjct 128317 AAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGT 128376 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 |||||||||||||||||| | |||||||| ||| |||||| | | || |||| || Sbjct 128377 TTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTAT 128436 Query 13510 CTGAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||| || ||||| || || || || || || ||||| || ||||| || | Sbjct 128437 TTGAACCTC-TCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTG 128495 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 ||||||| || | | ||||| ||||| | ||| || || || ||| || ||| Sbjct 128496 CAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAAT 128555 Query 13629 CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCT 13688 || ||||| | |||||||| | || || | |||||||| ||||| |||| |||| Sbjct 128556 CTTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCT 128615 Query 13689 TATA 13692 | || Sbjct 128616 TGTA 128619 >seq7 Length=694560 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 104790 AAGTCAAAGGTTTTCATGGGACCTATATACTATTTAAGGTTAAGACATTTAACTCAAGAC 104849 ||||| || |||| || ||||| | ||| ||| ||| |||| |||| | | |||| Sbjct 516950 AAGTCCAAAATTTTTATTGGACCAACATATTATCAAAGATTAAAACATATGGTTGAAGAT 517009 Query 104850 AAAGCTACA-GTAAGGTGTAGAGGaaaaaaaaCAAAATTAATAAGACAAGCTAACGAAGG 104908 ||| |||| | ||| |||||||| | ||| | | | ||||||| | | ||||| Sbjct 517010 AAAA-TACATGCAAGAAGTAGAGGACCATTAACTATGATTACAAGACAACCAACAGAAGG 517068 Query 104909 ACGAAGACGAggggggggAATAAAGTTTGGAGAGATGGAAAGAGACTGTTTAATAGCACA 104968 | || | ||| || || ||| |||||||| ||||||||||| ||| | ||| |||| Sbjct 517069 AAGATCAAGAGATGGTGGTCTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACA 517128 Query 104969 TGGTGCTGCAAA 104980 ||| |||| || Sbjct 517129 TGGATCTGCCAA 517140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978024585866