Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 192 1e-43 seq169 188 2e-42 seq6 127 5e-24 >seq5 Length=2479031 Score = 192 bits (212), Expect = 1e-43 Identities = 166/206 (81%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||||||||||||| || ||||||||||| || |||| ||||| || ||||||| |||| Sbjct 2307622 TGTAATGTAGATTCCTTTTGAATATTATAATCTGATAATGTTCTTCCATCTTCTAATTGT 2307681 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| |||| || ||||||||||| || |||||||||||||| ||||| ||| Sbjct 2307682 TTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTTGAATTTTT 2307741 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||||| || || || || || ||||| || || ||||| Sbjct 2307742 GCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTTTTCCAGTT 2307801 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 | |||||| ||||| || |||||||| Sbjct 2307802 AATGTTTTAACAAAAATTTGCATTTT 2307827 >seq169 Length=6603 Score = 188 bits (208), Expect = 2e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| ||||| || |||||||| |||||||| || || ||| Sbjct 5325 CCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGAT 5384 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| ||||| |||| ||||||||| ||||| |||| || ||||| ||||| || Sbjct 5385 AGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTGGA 5444 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||||||||| ||||| |||||||| ||||| || | ||| || ||||| || Sbjct 5445 ATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAACA 5504 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || || | |||||| ||||| || ||||| Sbjct 5505 TCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | |||| |||||||||||||| || ||||| || ||||| Sbjct 5550 ATACCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTGTAGTCT 5609 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||||| ||||||||||||||| |||| || ||||| ||||| Sbjct 5610 GATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTTTGTTGGTCAGGT 5669 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| ||||| |||||||| || | || || || || Sbjct 5670 GGAATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGATGGCTCG 5729 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || || || ||||| || || Sbjct 5730 ACGTCAAGGGTTATAGTTTTTCC 5752 >seq6 Length=2947581 Score = 127 bits (140), Expect = 5e-24 Identities = 347/516 (67%), Gaps = 14/516 (3%) Strand=Plus/Minus Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTG-GAAAAA 268818 ||||| |||||||| | ||||||| | ||| | ||| || |||| ||||| || ||| Sbjct 128604 GCTTCATTTTGGACAGCAGAAGAAATTGATTTATCTAGCGATTTAAAAGATTTTGAGAAA 128545 Query 268819 TTTAAA-ACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTG 268877 || || || | ||||| | |||||| || | | || |||||||||| |||| Sbjct 128544 TTGAATGACAATGAGAAACAT--TTTATAAAGCATGTGTTAGCATTTTTTGCAGCAAGTG 128487 Query 268878 ATGGTATCGTTAACGAAAATCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||||| || || ||| | | ||| || || | | ||||| || || | ||| Sbjct 128486 ATGGTATAGTATTAGAGAATTTGGCTAGTAAATTTTTAAGA-GAGGTTCAAATAACAGAA 128428 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | | ||||| || || |||||| ||||||||||||||||||| | || ||| Sbjct 128427 GCAAAAAAATTTTATTCTTTTCAAATAGCTGTAGAAAATATTCATTCAGAAACATATAGT 128368 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 ||||||| |||| |||||| | ||| | || |||| || ||||| | |||| Sbjct 128367 TTATTAATTGATAATTATATTAAAGATGAAAAAGAAAGATTAAATTTATTTCATGCTATA 128308 Query 269057 AGAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAG 269115 || ||| ||| || | ||| ||| | |||||| |||||||| || |||| Sbjct 128307 GAAAATAT-CCCTGCAGTAAAAAATAAAGCATTATGGGCAGCAAAATGGATTAATGATAC 128249 Query 269116 CGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 | | | |||||| |||| ||| ||| ||| ||||| ||||| || | | Sbjct 128248 TAATTCATTTGCTGAAAGGATAGTAGCTAATGCATGTGTTGAAGGAATATT-ATTCAGTG 128190 Query 269176 GT--CTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA-GGATTAACTTT 269232 || |||||| ||||| |||||||| || |||| | || || || ||||| || Sbjct 128189 GTAGCTTTTG-TGCTATTTTTTGGTTTAA-AAAACAAAATAAATTACATGGTTTAACATT 128132 Query 269233 CTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 ||| ||||| ||||| || || ||||| |||| Sbjct 128131 TAGTAATGAATTAATAAGTAGAGATGAAGGACTACA 128096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151386111340764