Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq9 190 2e-43 seq8 181 1e-40 >seq9 Length=776283 Score = 190 bits (210), Expect = 2e-43 Identities = 404/591 (68%), Gaps = 19/591 (3%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAG-CTT 6898 ||||| ||| |||| ||||| || |||||||| | |||| || || | ||| ||| Sbjct 512079 ATAAACATGCGCATTTCCTAAAACGTGTATAAATTCGGCAGGTTGCAAATTA-CAGACTT 512021 Query 6899 GAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCA 6958 | ||||| | || || || | | ||||||||| | |||||||||||| |||| ||| | Sbjct 512020 GTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACTCCTAGTCCTA 511961 Query 6959 TATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGA 7017 ||| ||| |||||||| ||| ||| ||||| | || | | ||||||||||| Sbjct 511960 AATCACATGACCTTTGATA-CATAATACATGATAATTTTCCATCGAAAACATAAAATTGA 511902 Query 7018 CACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTC 7077 || || | |||||| |||||||| | || || | ||| | |||||| ||| | Sbjct 511901 CATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACATTCCATGCACAC 511842 Query 7078 ATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTG 7136 | | ||| | |||| | |||| ||||||||| || || || ||| |||||| Sbjct 511841 AAAAGAATTCTTCTACTTGTAGGATCA-TTTTTAATTAAATTTATTATATTTTTTAATTG 511783 Query 7137 ATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCT 7196 ||| | ||| | | |||||||||| ||| |||| |||| | |||||| |||||||| Sbjct 511782 ATCAACACCTTTATTTTCATAATTATCATGCATATTTGTATATTCAGCTCCGAAATGTCT 511723 Query 7197 CCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAAT 7254 ||||||||| ||||||||||| |||||||| |||| | ||| || | | ||| | Sbjct 511722 CCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTATGAAATAATTTTCTATT 511663 Query 7255 CGATTTAAATTAGATT---TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGAT 7311 || ||| | ||| | | |||| ||| ||||| || |||| || ||| | Sbjct 511662 --ATCTAA---AAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTCTTATTTAAC 511608 Query 7312 AAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGC 7371 | | | |||||| |||| ||| ||||| | | |||||| | ||||| | Sbjct 511607 AGCGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATAATTCCTCTT 511548 Query 7372 CAAAACATTCTTTTTGTAGTGAATAAAGGGA---ATGTACTTAAATCATAT 7419 | || | | | |||||||| ||||| |||| || |||||||||| || Sbjct 511547 AAGAATAATTTCTTTGTAGTTAATAATGGGAAATATTGACTTAAATCAAAT 511497 >seq8 Length=842317 Score = 181 bits (200), Expect = 1e-40 Identities = 473/713 (66%), Gaps = 25/713 (4%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | | ||||| ||||||| || || Sbjct 67306 AATTTCAATTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTTAAAACAATATTT 67247 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || |||||||| ||| | ||| | | || |||||| ||||||| | |||| Sbjct 67246 AGAAGAACATTTGCTAGTAGGATATATCCAAATTATATTATAAAACAATTAGG-TATAAA 67188 Query 164512 -CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCG 164570 ||| |||| || || ||||| |||| ||||||||| |||||||| ||||| ||| | Sbjct 67187 GCATGTAAAGGGTATGATATTATATGGTCCTCCTGGTACAGGTAAAACGTTAATAGCTAG 67128 Query 164571 ATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 | || | ||| || ||| || || ||| ||||| |||||||||| ||| | Sbjct 67127 ACAAATAG-GGAAGACATTGAATGCACGAGAACCG--AAAATAATTAATGGTCCAGAAAT 67071 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 ||| || |||||||| || | ||||||| ||| || | || || ||| | || || || Sbjct 67070 ATTAAATAAATATGTTGGACAATCAGAAGAAAATATTCGTAATTTATTTAAAGACGCAGA 67011 Query 164688 AGAAGAACA-AAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGA 164746 | ||| | ||| |||| | | | | ||||||| | || | || ||||| | Sbjct 67010 AATGGAATATAAACAAAGTGGCGAGAATTCAT-TATTACATATAATAATATTAGATGAAA 66952 Query 164747 TAGATGCTCTTTGCAAA--------AAACG-TGGTGATAATATTA------TTCATGATG 164791 | |||||| | || | | ||| | ||| | || || | ||||| Sbjct 66951 TTGATGCTATATGTAGACAGAGAGGAAATGCAGGTTCAAGTAGTACTGGTGTAAATGATA 66892 Query 164792 CAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAA 164851 || || ||||| || || |||||||| ||||| ||| | ||||||||||| ||| Sbjct 66891 GTGTAGTAAATCAATTACTATCTAAAATTGATGGAGTAAATAGTTTAAATAATATCTTAT 66832 Query 164852 TTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGAT 164911 | | || ||||| || || |||||||| ||||| ||||| | || ||||| ||| Sbjct 66831 TAATTGGAATGACAAATAGAATAGATTTAATAGATGAAGCTTTGCTTCGTCCTGGAAGAT 66772 Query 164912 TAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAG 164971 | || || | ||||||||| ||||| | |||||||| | ||||||| ||||| Sbjct 66771 TTGAGTTACATATAGAAATATCCTTACCAAATAAAGAAGGGAGAATTCAAATATTAAATA 66712 Query 164972 TTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAA 165031 ||||| || |||| | || ||| |||| | | |||||| || || || Sbjct 66711 TTCATACAAAAAATATGAGAATGAGTAATAAATTAAGTTCAGATGTAAATATATTAGAAT 66652 Query 165032 TAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||| | |||| || | | ||| || ||| | || || ||||||||| Sbjct 66651 TAGCAGAAAAAACACCTAACTTTTCTGGAGCAGAAATTGAAGGGTTAGTAAGA 66599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595865795482800