Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5 132 4e-26 seq169 131 2e-25 >seq5 Length=2479031 Score = 132 bits (146), Expect = 4e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| || |||||||||||||| | |||||||| | ||| |||| ||| | Sbjct 2307616 ACCAAGTGTAATGTAGATTCCTTTTGAATATTATAATC--TGATAATGTTCTTCCATCTT 2307673 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | | |||||||| |||| ||||||||||| ||||| || ||||| |||||||| || | Sbjct 2307674 CTAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGTGGAATTCCTTCTTTATCTT 2307733 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||||||||| || | | || |||| | || || |||| || || |||| Sbjct 2307734 GAATTTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATTGTTT 2307793 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| | ||||| ||||| || ||||| Sbjct 2307794 TTCCAGTTAATGTTTTAACAAAAATTTGCAT 2307824 >seq169 Length=6603 Score = 131 bits (144), Expect = 2e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| | || ||||| ||||| || |||||||||||||| | Sbjct 5540 AAAAATTTGCATACCACCTCTTAGTCTTAACACTAAGTGTAATGTAGATTCCTTTTGAAT 5599 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | ||| |||| ||| || | |||||||| |||| ||||||||| Sbjct 5600 GTTGTAGTC--TGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAATATTAATCTT 5657 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || || ||||| |||||||| || | |||||||||||| || | | |||| Sbjct 5658 TGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTG 5717 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 |||| | |||||||||| || || |||||||| Sbjct 5718 TCAGATGGCTCGACGTCAAGGGTTATAGTTTTTCC 5752 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| ||||| ||||| || || ||||| ||||| | || ||||| | Sbjct 5325 CCACCTCTTAATCTTAACACTAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATC--TG 5382 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| ||||| | ||||||||| |||| ||||||||||| || || || | Sbjct 5383 ATAGAGTTCTTCCGTCCTCTAATTGTTTTCCGGCAAATATTAATCTTTGTTGGTCAGGTG 5442 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| |||||||| || | ||||||||| || || | | ||||||| | || | Sbjct 5443 GAATTCCTTCTTTATCTTGAATTTTTGCTTTAACATTCTCAATGGTGTCAGATGGTTCAA 5502 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || ||||||||||| || | ||||| ||||| || ||||| Sbjct 5503 CATCGAGAGTAATGGTTTTTCCTGTTAATGTTTTAACAAAAATTTGCAT 5551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286532167880