Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq13 156 7e-33 >seq13 Length=1110535 Score = 156 bits (172), Expect = 7e-33 Identities = 430/651 (66%), Gaps = 16/651 (2%) Strand=Plus/Plus Query 193551 AGAATTGATCATATCTATGAGAAGATCACTCTTCATTATGGAGATCTAACTGATCCT-GT 193609 || ||||||||||| | ||| ||| | | | | |||||||||||| || |||| | || Sbjct 497225 AGGATTGATCATATATTTGATAAGTTAATTTTACATTATGGAGATTTACTTGATAGTAGT 497284 Query 193610 AAATGTTATGGGTGTCATTA----GGGCAGTTGAACCTGCTGAGATCTATAATCTTGGTG 193665 || ||| || |||||| | | | | |||| ||| || ||||| | | || Sbjct 497285 AA----TATATGT-TCATTAATATGTGAAATAAAACCGAATGAAATATATAACTTAGCTG 497339 Query 193666 CTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTT 193725 | ||||||||||| ||||| ||||| ||||| |||||||| || | | ||||| Sbjct 497340 CACAAAGTCATGTAAAAGTAAGTTTTGAAATGCCTGAGTATACGACTGAAGCAACTGCTT 497399 Query 193726 TAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCA 193785 |||| || | |||||| | |||| | | | || | || | ||| || || Sbjct 497400 TAGGTACCTTAAGAATATTAGAAGGAATAAGAATATC---AAAAGTTAAAAATATTAAAT 497456 Query 193786 TCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAA 193845 | ||| | ||||| || ||| | | ||| |||| | | || | | |||| Sbjct 497457 TTTATAATGCATCCACATCTGAATTATTTGGAAAAGTTCAATGTTCTATTCAAAATGAAA 497516 Query 193846 CCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCA 193905 || |||||| ||||| || ||||||| | ||||||| || |||| ||| || | Sbjct 497517 GTACGCCATTTTATCCAGTATCACCTTATGCTATAGCAAAATTATATGCACATTATATTA 497576 Query 193906 TCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACG 193965 | |||||| | || |||||| | || | ||| ||| | || ||||| | Sbjct 497577 CAATAAATTATAGAGAATCATATAATATGTTTTGTATTAATGGCATTTTATTTAATCATG 497636 Query 193966 AATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGA 194025 || |||||||||||| || || ||||| || | || ||||| |||| | | || | Sbjct 497637 AAAGTCCAAGAAGAGGAGAAACTTTTGTTACCAGAAAAATTACTAGAGGTATTGCAAAAA 497696 Query 194026 TCTCTGTTGGATTACAGAAGATTCTTTATCTT-GGTAATCTTAATGCTAAGAGGGATTGG 194084 | |||||| || || | ||||||| |||||| | || | | || |||||| Sbjct 497697 TTCAAAAAAAATTACA-AACATCCATTATCTTAGGTAATATAGATACATATAGAGATTGG 497755 Query 194085 GGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGAT 194144 || || ||||||||||||| | || |||| | ||||| ||||| |||| | | Sbjct 497756 GGTCATGCAAAGGATTATGCATATGCTATGTATCTTATGTTACAACAAAATGAGGCAAGT 497815 Query 194145 GATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAG-ACTTTGTGAA 194194 |||| ||| ||| | || |||||| |||||||||||| | |||||||| Sbjct 497816 GATTTTGTTATTTGTTCAAATGAACAACATTCTGTTAGAGAATTTTGTGAA 497866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807546791331480