Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq6 239 5e-58 >seq6 Length=2947581 Score = 239 bits (264), Expect = 5e-58 Identities = 584/878 (67%), Gaps = 21/878 (2%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 |||||||||||| || ||||| |||||||| ||||| ||||||| | ||| || | Sbjct 127789 TTTTTGATAATCTGCGACCCTTTTCTCGAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 127848 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||| |||||||||| || | || |||||| || || | | ||| Sbjct 127849 GTCCATCCAATTGAATGGATTTTTTGAATGGAAAATTTTAGAGCATCCTAAACATTCTAA 127908 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||||||||| |||||||||||||||||| |||| | | | |||||||||| || || Sbjct 127909 TAATCTATCTGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATACCTATTAA 127968 Query 21364 TTTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 | ||| || | | || | ||||||| |||| | || ||||| || | Sbjct 127969 ATC-ACATGGTAATGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACAA 128027 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAAT--AATTGTTTAAACATCAAACATGC 21480 ||||| || | | ||| || | | || || ||| || | || || || Sbjct 128028 TATTTTGTACCATT--TGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAATT 128085 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 |||||| ||| | |||||||| |||||||||||||||||| |||||||||||| | Sbjct 128086 AAAATCTGTATGTAGTCCTTCATCTCTACTTATTAATTCATTACTAAATGTTAAACCATG 128145 Query 21541 CA-TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATG 21598 | || || | | ||||| |||||||| || | | |||| ||| || || || || Sbjct 128146 TAATTTATTTTGT-TTTTTAAACCAAAAAATAG-CACAAAAGCTACCACTGAATAATATT 128203 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG---TAGATTCTTTATCCAAT 21655 || ||||| ||| || |||| | |||| | ||| ||| || ||| Sbjct 128204 CCTTCAACACATGCATTAGCTACTATCCTTTCAGCAAATGAATTAGTATCATTA------ 128257 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||||||| |||||||| ||| || || |||| | || | | | || ||||| | Sbjct 128258 ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACTGCAGGGATATTT-TCTATAGCATG 128316 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || | || | |||| | | |||| | || |||||| | Sbjct 128317 AAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGT 128376 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 ||| ||||| |||||||||| ||||| ||||| ||||| | |||| |||| Sbjct 128377 TTCTGAATGAATATTTTCTACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCTGTTAT 128436 Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 ||||||||| ||||| |||||| || || |||||| |||||||| || || Sbjct 128437 TTGAACCTCTCTTAAAAATTTACTAGCCAAATTCTCTAATACTATACCATCACTTGCTGC 128496 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 ||||||||| || | || |||||||||| | || || || | ||||| | |||| Sbjct 128497 AAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTGTCATTCAATTTCTCAAAATC 128556 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 | |||||| | |||||||| | |||||| | ||||||||| ||| ||| || || Sbjct 128557 TTTTAAATCGCTAGATAAATCAATTTCTTCTGCTGTCCAAAATGAAGCTTCAGCTTTCTT 128616 Query 22015 ATACATAATCCAGATATCATTATATATTATTGGAAATA 22052 || | | ||| | ||| ||||| ||||||| ||| Sbjct 128617 GTAAAAATCCCAAACTTCAGGATATAATATTGGATATA 128654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531895261582920